Query= MSMg01no342_l10.b1 MSMg01no342_l10.b1 CHROMAT_FILE:
MSMg01no342_l10.b1 PHD_FILE: MSMg01no342_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:18 2005
(546 letters)
>mm_chrX_81297459_81298404
Length = 946
Score = 988 bits (511), Expect = 0.0
Identities = 526/531 (99%), Gaps = 2/531 (0%)
Strand = Plus / Plus
Query: 5 gaattctctacagatac-cagacattagagagcaaacaagaatcagtatgagaaagcata 63
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctacagatacacagacgttagagagcaaacaagaatcagtatgagaaagcata 264
Query: 64 ccccttggtatgtttcctataatgcagttactgtgtgctttctttcactttatgcagctc 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccccttggtatgttccctataatgcagttactgtgtgctttctttcactttatgcagctc 324
Query: 124 cctgctctcatccttccctcagatgttgcccccactgagcatttataaacagtctgtttc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgctctcatccttccctcagatgttgcccccactgagcatttataaacagtctgtttc 384
Query: 184 cagttgttctactgacttcagaagtgaaaattctacatagccatgccagtactgattttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagttgttctactgacttcagaagtgaaaattctacatagccatgccagtactgattttt 444
Query: 244 ttatactcatttaatgaatcctctaagtatactgacttgaagaagggaccataatctcta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttatactcatttaatgaatcctctaagtatactgacttgaagaagggaccataatctcta 504
Query: 304 aaatgaatatgtctcacgctatagatatgtaactatcttccatcattgcaaacaaaaatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatgaatatgtctcacgctatagatatgtaactatcttccatcattgcaaacaaaaatt 564
Query: 364 tataacagtttgaacaaatgaaatagaaaacaatacaaccaaaagtattgtttttttctc 423
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 tataaaagtttgaacaaatgaaatagaaaacaatacaaccaaaagtattgtttttt-ctc 623
Query: 424 ataatgacatttcttgcatttaagtaaacaaatttaaatgcattagagatagtaccttgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ataatgacatttcttgcatttaagtaaacaaatttaaatgcattagagatagtaccttgg 683
Query: 484 ctgattatgattttctgcatcacacacacacacacacacacacacacacac 534
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctgattatgattttctgcatcacacacacacacacacacacacacacacac 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_l10.g1 MSMg01no342_l10.g1 CHROMAT_FILE:
MSMg01no342_l10.g1 PHD_FILE: MSMg01no342_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:18 2005
(491 letters)
>mm_chrX_81365885_81366774
Length = 890
Score = 876 bits (453), Expect = 0.0
Identities = 480/495 (96%), Gaps = 13/495 (2%)
Strand = Plus / Minus
Query: 1 aattctcagaacccatgtggtagaaagaaataacagattcctccaagttatcctctgaga 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aattctcagaacccatgtggaagaaagaaataacagattcctccaagttatcctctgaga 580
Query: 61 tatatagtgtcacatttatacatacacatacacagagaaacataaacaa----acaaaca 116
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 579 tatatagtgtcacatttatacatacacatacacagagaaacataaacaaacagacaaaca 520
Query: 117 gaaaaaacaagtaaaacaaaaatgtagaaagaagaaaataaaaggataaaaatattattt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaaaaaacaagtaaaacaaaaatgtagaaagaagaaaataaaaggataaaaatattattt 460
Query: 177 gttcttaaggaattcctctttacagtgaaatttgtccaaattctcagagattgaataaaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gttcttaaggaattcctctttacagtgaaatttgtccaaattctcagagattgaataaaa 400
Query: 237 tagattaatattcattgaagccacattacttctagtcagtatgaaatcagaaaaaaatat 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tagattaatattcattgaagccacattacttctagtcagtatgaaatcagaaaaaaatag 340
Query: 297 taggttaacaggataaaagagacttttcctaatgatatctgatacacctaagagaatcag 356
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 339 taggttaacaggataaaagagacttt-cctaatgata-------cacctaagagaatcag 288
Query: 357 ttactaggcaaaatggaagaaatgctacaaacaaaatgacaaggagagcaaagaatgttg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttactaggcaaaatggaagaaatgctacaaacaaaatgacaaggagagcaaagaatgttg 228
Query: 417 tgatgaacctcaagtgtgatgcactgaaaagcatttttttttaattttctacaaatttta 476
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 227 tgatgaacctcaagtgtgatgcactgaaaagcatttttttt-aattttctacaaatttta 169
Query: 477 taagcgcatgctagc 491
|||||||||||||||
Sbjct: 168 taagcgcatgctagc 154
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space: 423280
Effective search space used: 423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
