BAC Information

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BAC

Clone NameMSMg01-343B14
ChromosomeX (Build37)
Map Location 140,146,575 - 140,292,889
singlet/doubletdoublet
Overlap genePak3, Capn6, Dcx
Upstream geneTmem164, Ammecr1, Rgag1, LOC209541, Chrdl1
Downstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343B14.T7 (MSMg01no343_b14.b1)MSMg01-343B14.TJ (MSMg01no343_b14.g1)
ACCAG456492AG456493
length792773
length of high quality
(start - end)		436 (58 - 493)200 (66 - 265)
definitionCHROMAT_FILE: MSMg01no343_b14.b1 PHD_FILE: MSMg01no343_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:48 2005CHROMAT_FILE: MSMg01no343_b14.g1 PHD_FILE: MSMg01no343_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,292,454 - 140,292,889)(140,146,575 - 140,146,773)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAGTTG
AATGCAAGGCACTTTCCTACTTGGATTACAAGAGCAGTTGAGTTGAAAAA
GGTCAAAGAGAACAGAGAAGTCAGAAGACCAAGTCTTGTAAACTAAAACA
AAGACCCGAAGCTTCAGAATGTCTCGATTTTGGGCAATAACTCAAGGAAA
TAAATGGCTTTTTGTCATTCCATTTCCTGTTTTCTTTCTCTATTTAGATG
CCTATATTTGTTCTCAGTTATCAGTCTCTCATTCCGTAGCAAAAACATCC
ATTCTTTGACTTGTGAGGTACTTCCTCCTCTTTTGGAATCCGTTGCTTCT
TCCCACCTCACTACTGGGTATAAGCTTCTTCATAGTCTGTAAGTTTTACC
TTGGGATTGAAGAGAAATTATTTTCTGTTTCAAAAATTCCTGGTTCTACC
CCTATTCAGTCACAAGTAGGTTGGTAGAAAACAACCTGATTCTGACCCTT
TCTTTTTTTTTTTCCTGTTTTAGCCCCAGTAGATTATTTTCAACCCTGTC
CTTTATGCCTCCAGAATGTTTAAGTCCTTTAATTTTCCAGTTTATTATCT
TACAAACACCTGTTTGCGTTCTTTCTTTTTTGTATTGAGTGTTTAGCACT
ACTCTCGTATATGTCTTTAATTACACTCACACCACACACATTAATTACAC
TCTTATCCTTCTCTTATCTATTATTGGNAATTTTTTCTTGTAATTACATT
ATTTTCGTCTCTACCCTATTTATTGTAACCCTCAATTTTGCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCAGCAATTTGTTGAATTGTAGTGAAGTTGTTTTA
CAAGAACCTGCTCTTTTGAATAATTGAGCACCAGTTTGATATGTTGATTG
GTGATTACCCTAATGGCTAGTTGGCTCATATAAACTTGTATACCTACATG
TGCATACACTTGGACCCTAAAGCTAAAATTAGGATGGGAGGTGAGATTTG
GGGATTAAATTATTTATAGTNCTTANCAGTTATATTGNCATTTTTGTCCC
AAATACTTCATAACTCCCCTTTCCAGATCTCTATATCTGTGACGGTCGCT
CTCAGTCTATCCGATTCACACTTGGGTTTAGTGACACACTTTATCTTTTT
GGTATGCTCCCCTAACCGTTCTGGCCTGTTTCATCTCGCTTCCATTTTCC
CCGTTCTAACACTGTTCTATCGCCATCGTTGTCTCAATCTCACTCGCTGA
TGGTCTTTTTTTATATTCTTTTCTCTCCGGATCCTCTTTTCTTTTCAGTT
CTTTTTCTCCCCTCCCCTTTTCTTTCCCGTTCGTATTTTCTCTTTTTCTT
TTTAGCTCCTNTCTCNTCTCCTCTTTCCCTCACCCTCCTGTTTTGATTTT
CCCGGCGGTCCGCCCGCTTCTTCTTTACTACTTTACCTTTCTTCTTCTCT
CTTTACCATTCTCTATTCTATACTTATCGGTTTCTTTCTCCTTATGATAG
CTCACCCTTGCTATCCATATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_b14.b1 MSMg01no343_b14.b1 CHROMAT_FILE:
MSMg01no343_b14.b1 PHD_FILE: MSMg01no343_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:48 2005
         (436 letters)



>mm_chrX_140292254_140293089
          Length = 836

 Score =  828 bits (428), Expect = 0.0
 Identities = 434/436 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcactttcctacttggattacaagagcagttgagttgaaaaaggtcaaagagaacagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ggcactttcctacttggattacaagagcagttgagttgaaaaaggtcaaagagaacagag 577

                                                                       
Query: 61  aagtcagaagaccaagtcttgtaaactaaaacaaagacccgaagcttcagaatgtctcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aagtcagaagaccaagtcttgtaaactaaaacaaagacccgaagcttcagaatgtctcga 517

                                                                       
Query: 121 ttttgggcaataactcaaggaaataaatggctttttgtcattccatttcctgttttcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttttgggcaataactcaaggaaataaatggctttttgtcattccatttcctgttttcttt 457

                                                                       
Query: 181 ctctatttagatgcctatatttgttctcagttatcagtctctcattccgtagcaaaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 456 ctctatttagatgcctatatttgttctcagttatcagtctctcattcggtagcaaaaaca 397

                                                                       
Query: 241 tccattctttgacttgtgaggtacttcctcctcttttggaatccgttgcttcttcccacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tccattctttgacttgtgaggtacttcctcctcttttggaatccgttgcttcttcccacc 337

                                                                       
Query: 301 tcactactgggtataagcttcttcatagtctgtaagttttaccttgggattgaagagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tcactactgggtataagcttcttcatagtctgtaagttttaccttgggattgaagagaaa 277

                                                                       
Query: 361 ttattttctgtttcaaaaattcctggttctacccctattcagtcacaagtaggttggtag 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 276 ttattttctgtttcaaaaattcctggttctacccctgttcagtcacaagtaggttggtag 217

                           
Query: 421 aaaacaacctgattct 436
           ||||||||||||||||
Sbjct: 216 aaaacaacctgattct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no343_b14.g1 MSMg01no343_b14.g1 CHROMAT_FILE:
MSMg01no343_b14.g1 PHD_FILE: MSMg01no343_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:48 2005
         (200 letters)



>mm_chrX_140146375_140146974
          Length = 600

 Score =  369 bits (191), Expect = e-107
 Identities = 197/199 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagcaatttgttgaattgtagtgaagttgttttacaagaacctgctcttttgaataatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagcaatttgttgaattgtagtgaagttgttttacaagaacctgctcttttgaataatt 260

                                                                       
Query: 61  gagcaccagtttgatatgttgattggtgattaccctaatggctagttggctcatataaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 gagcaccagtttgatatgttgattggtgattaccctaatggctagttagctcatataaac 320

                                                                       
Query: 121 ttgtatacctacatgtgcatacacttggaccctaaagctaaaattaggatgggaggtgag 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtatacctacatgggcatacacttggaccctaaagctaaaattaggatgggaggtgag 380

                              
Query: 181 atttggggattaaattatt 199
           |||||||||||||||||||
Sbjct: 381 atttggggattaaattatt 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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