BAC Information

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BAC

Clone NameMSMg01-344A24
ChromosomeX (Build37)
Map Location 157,889,153 - 158,041,705
singlet/doubletdoublet
Overlap genePrkaca-ps1
Upstream geneGpr64, Phka2, Ppef1, Rs1, Gja6, Scml2, LOC414364
Downstream geneRai2, Gm47, Nhs, Reps2, LOC654358, LOC100041557
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344A24.T7 (MSMg01no344_a24.b1)MSMg01-344A24.TJ (MSMg01no344_a24.g1)
ACCAG457217AG457218
length751744
length of high quality
(start - end)		484 (69 - 552)558 (72 - 629)
definitionCHROMAT_FILE: MSMg01no344_a24.b1 PHD_FILE: MSMg01no344_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:08 2005CHROMAT_FILE: MSMg01no344_a24.g1 PHD_FILE: MSMg01no344_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,889,153 - 157,889,636)(158,041,148 - 158,041,705)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAGGCTATTCCTGGGGCTTTCATCCAGGCTGGTGGCCAGTGGAGCA
GTGTGGCAATGGCAACAGTGACAGGAACTGCTGGAGACTAGAACAGTATA
CTACTACTGCTTTTGGGGCTTGTCTGTCTTGGTGTGAGGCCTCCCAGACT
CCCGATAAGACAGAGACCTTCCCAGATCACCCTACCACCACCACCCCTGC
TGTGTTTACACCACCCCTGCCTGAGCGATATCCTATTCCAATTTCTCCAG
CTAATCAATATTCCAATATAAATGAACTCTTGTGAAGTTGACAAAGCTGA
TTTCCCTTTTTGATTTCTTTCTATGGCTGTGAAGTGTGATTTTCAGTAAG
GTATCTCAAATTTTGGCTTTAGGGATGTACTGGCTGGTTTTGTGTGTCAA
GTTGACACAAGCTGGAGTTGTCACAGAGAAAGGAGCCTCCCTTGAGGAAA
TGCCTCCATGAGATCCAGCTGTAAGGCATTTTCTCAATTAGTGATCAAAG
GTGGGAGGGNCCATTATGGGTGGTGCCATCCAGGGCTGGTAGTCATGGGT
TCTATAAGAAACAAGCTGAGCAAGCCAGGGGAATCAAGCCAGTAAAGACA
TTCCCTCCTGGGCTCTGCATCAGCTCCTGCTTCCTGAACTGCTTGAGTTC
CGGGGTGACTTCCTTTGTGGGAGGACACATTTTGGAAAAGCACTTTGAAA
N

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTGGGATCTGGACAAAGTTAGGAGGACT
AACTTGGTTGGTATGGTTTTTAAGAACTAGCAGGAGGGAAGAGTGATTAC
CACTGATGCTGTTAGTTGAGCCTGGTAAGAATTGGAGCCATGAGGGAGGA
GTCTCTTAGTAGGAATCATAATCCAGCAGGAATATGAATGATAGCAGAAA
CAGAAATCAGAAATAATGCTTCTATCTAGCCATTCTTGAATCTACTGTTG
GCATCTTCTATTGATCAATCATAACCAGATATCAGATGTCAAGAGCTACT
GCTGGTGCAGTATCCTGGAATAAGTTCCTGAGGTATGACAAAGACTTGAT
CTGGGGATTTCAAGGGGCAAAGGAAGAGCCAGTACATCCCAATTTTCCCA
TATCAATGGGATGGAAAATTTTCATGTCTCCCCATTATATATTCCCATGT
AGAGGTTATGTTATGGTACAGGATATGTACTTTAACATCTTATGATATAC
CTATAAGTATTATGATCTACTCTGCTATGGTTTCAGTAAGTATCACCCAG
AGACTATGTAGTANAGGCTTGGTCTCCAACCTGTGGCACTACTACTATGA
GGTAGTAGAAACTATAAGAGAAGGTATCAAAAAAAAAAGAGAGAATGTAT
CTAGTGGGAGATTTTCCATTGGAAAGCTATGAGAGGGGCTGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_a24.b1 MSMg01no344_a24.b1 CHROMAT_FILE:
MSMg01no344_a24.b1 PHD_FILE: MSMg01no344_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:08 2005
         (484 letters)



>mm_chrX_157888953_157889836
          Length = 884

 Score =  928 bits (480), Expect = 0.0
 Identities = 483/484 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctttcatccaggctggtggccagtggagcagtgtggcaatggcaacagtgacaggaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctttcatccaggctggtggccagtggagcagtgtggcaatggcaacagtgacaggaac 260

                                                                       
Query: 61  tgctggagactagaacagtatactactactgcttttggggcttgtctgtcttggtgtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctggagactagaacagtatactactactgcttttggggcttgtctgtcttggtgtgag 320

                                                                       
Query: 121 gcctcccagactcccgataagacagagaccttcccagatcaccctaccaccaccacccct 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gcctcccagactcccgataagacagagaccttcccagatcacgctaccaccaccacccct 380

                                                                       
Query: 181 gctgtgtttacaccacccctgcctgagcgatatcctattccaatttctccagctaatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgtgtttacaccacccctgcctgagcgatatcctattccaatttctccagctaatcaa 440

                                                                       
Query: 241 tattccaatataaatgaactcttgtgaagttgacaaagctgatttccctttttgatttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattccaatataaatgaactcttgtgaagttgacaaagctgatttccctttttgatttct 500

                                                                       
Query: 301 ttctatggctgtgaagtgtgattttcagtaaggtatctcaaattttggctttagggatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctatggctgtgaagtgtgattttcagtaaggtatctcaaattttggctttagggatgt 560

                                                                       
Query: 361 actggctggttttgtgtgtcaagttgacacaagctggagttgtcacagagaaaggagcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actggctggttttgtgtgtcaagttgacacaagctggagttgtcacagagaaaggagcct 620

                                                                       
Query: 421 cccttgaggaaatgcctccatgagatccagctgtaaggcattttctcaattagtgatcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccttgaggaaatgcctccatgagatccagctgtaaggcattttctcaattagtgatcaa 680

               
Query: 481 aggt 484
           ||||
Sbjct: 681 aggt 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_a24.g1 MSMg01no344_a24.g1 CHROMAT_FILE:
MSMg01no344_a24.g1 PHD_FILE: MSMg01no344_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:08 2005
         (558 letters)



>mm_chrX_158040948_158041905
          Length = 958

 Score = 1050 bits (543), Expect = 0.0
 Identities = 554/558 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgggatctggacaaagttaggaggactaacttggttggtatggtttttaagaactagc 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 758 attgggatctggacaaagttaggaggactaacttggttggtatggcatttaagaactagc 699

                                                                       
Query: 61  aggagggaagagtgattaccactgatgctgttagttgagcctggtaagaattggagccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aggagggaagagtgattaccactgatgctgttagttgagcctggtaagaattggagccat 639

                                                                       
Query: 121 gagggaggagtctcttagtaggaatcataatccagcaggaatatgaatgatagcagaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gagggaggagtctcttagtaggaatcataatccagcaggaatatgaatgatagcagaaac 579

                                                                       
Query: 181 agaaatcagaaataatgcttctatctagccattcttgaatctactgttggcatcttctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agaaatcagaaataatgcttctatctagccattcttgaatctactgttggcatcttctat 519

                                                                       
Query: 241 tgatcaatcataaccagatatcagatgtcaagagctactgctggtgcagtatcctggaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgatcaatcataaccagatatcagatgtcaagagctactgctggtgcagtatcctggaat 459

                                                                       
Query: 301 aagttcctgaggtatgacaaagacttgatctggggatttcaaggggcaaaggaagagcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aagttcctgaggtatgacaaagacttgatctggggatttcaaggggcaaaggaagagcca 399

                                                                       
Query: 361 gtacatcccaattttcccatatcaatgggatggaaaattttcatgtctccccattatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtacatcccaattttcccatatcaatgggatggaaaattttcatgtctccccattatata 339

                                                                       
Query: 421 ttcccatgtagaggttatgttatggtacaggatatgtactttaacatcttatgatatacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 338 ttcccatgtagaggttatgttatggtacaggatatgtactttaacatctcatgatatacc 279

                                                                       
Query: 481 tataagtattatgatctactctgctatggtttcagtaagtatcacccagagactatgtag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tataagtattatgatctactctgctatggtttcagtaagtatcacccagagactatgtag 219

                             
Query: 541 tanaggcttggtctccaa 558
           || |||||||||||||||
Sbjct: 218 taaaggcttggtctccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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