BAC Information

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BAC

Clone NameMSMg01-344I03
ChromosomeX (Build37)
Map Location 152,407,900 - 152,408,516
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394, Ptchd1
Downstream gene4930503H13Rik, LOC640803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344I03.T7 (MSMg01no344_i03.b1)MSMg01-344I03.TJ (MSMg01no344_i03.g1)
ACCAG457557AG457558
length733724
length of high quality
(start - end)
622 (50 - 671)260 (72 - 331)
definitionCHROMAT_FILE: MSMg01no344_i03.b1 PHD_FILE: MSMg01no344_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:43 2005CHROMAT_FILE: MSMg01no344_i03.g1 PHD_FILE: MSMg01no344_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAAATTTTACGCTCATTATTTAAATGATATGCTGTAAAAGA
ACAACAACAATAACAACAGCAAATGAGCAATAGCATACTTAAAATGAAAA
ATTCAAAATCTTCTATAGTTTAAGAAGCACATGCCAAAGGTGTTAAGCAC
ACAGGAAAATGCCTAAAACCTGCCAAGTTGGGAGTAAATTTTGTTGAGGA
ATAGATTTCAATTTACATTGCAAGGAAGTTGCTATTAACAGCCATGAGTC
AGGTAAAAGAAATGTGGGATGTTTGCATATGTGTTTTAATGATTCACTAG
TCAAGGAAGGGTACAGAGATATTCTCAAAAATTGCTCCAGGGGATACTAC
ATATTTCATTTCAGCATTAGTCAGTCTGAAAAAGATTACAGGATGTACTC
CTCAATTTGAATGACTATTCTACTATTAAAATTCTGTTTAGTTCAAAGCA
AACAGTAAAATTTCAATGGAAAAATTTTCCTTTGGATAGCAGTTCTTTGA
AAACAAACTGTCAGTTCCATGGAAACTGAAGCAGCTGGTTGGGGAAAGGT
GGGATAAAGCATTTCCTATGAGGATATTAGCCACTAGATGAGCTTACCTA
ACAGTCATTCTATTGACTAAATGACCAGTCTGGACATCGTTCAATAATAT
ATTCAAGTTTACATATAAGTTTGTAAGAACGAN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGAAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTCCAGTTGTTGGTGGGATTGCGAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACGACCGGAGGATCCCG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCTCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGTATACAGAAAATGT
GGTAGATCTACGGCAATGGAGTACGACTCAGCTATGAAAAAGAATGAGTT
TATGGAATTCCTAGCCGAATGGATGGACCTGCGGGGCACCGTCCTGACGG
AGGTAACCGGTTCACAAAGGAACTCACACGGTATGTACTCACTGATAAGT
GGATATTAGCCCAAACCCTAGGGTATCCAGGACATAAGATACAATTTCCT
AAGCACATGAACGTCCATAGGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_i03.b1 MSMg01no344_i03.b1 CHROMAT_FILE:
MSMg01no344_i03.b1 PHD_FILE: MSMg01no344_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:43 2005
         (622 letters)



>mm_chrX_152407696_152408716
          Length = 1021

 Score = 1149 bits (594), Expect = 0.0
 Identities = 612/618 (99%), Gaps = 1/618 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaattttacgctcattatttaaatgatatgctgtaaaagaacaacaacaataa 64
           ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 gaattcaaaatttcaag-tcattatttaaatgatatgctgtaaaagaacaacaacaataa 763

                                                                       
Query: 65  caacagcaaatgagcaatagcatacttaaaatgaaaaattcaaaatcttctatagtttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 caacagcaaatgagcaatagcatacttaaaatgaaaaattcaaaatcttctatagtttaa 703

                                                                       
Query: 125 gaagcacatgccaaaggtgttaagcacacaggaaaatgcctaaaacctgccaagttggga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gaagcacatgccaaaggtgttaagcacacaggaaaatgcctaaaacctgccaagttggga 643

                                                                       
Query: 185 gtaaattttgttgaggaatagatttcaatttacattgcaaggaagttgctattaacagcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gtaaattttgttgaggaatagatttcaatttacattgcaaggaagttgctattaacagcc 583

                                                                       
Query: 245 atgagtcaggtaaaagaaatgtgggatgtttgcatatgtgttttaatgattcactagtca 304
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 582 atgagtcaggtaaaagaaatgtgggatgtttgcacacgtgttttaatgattcactagtca 523

                                                                       
Query: 305 aggaagggtacagagatattctcaaaaattgctccaggggatactacatatttcatttca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aggaagggtacagagatattctcaaaaattgctccaggggatactacatatttcatttca 463

                                                                       
Query: 365 gcattagtcagtctgaaaaagattacaggatgtactcctcaatttgaatgactattctac 424
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gcattagtcagtctgaaaaaggttacaggatgtactcctcaatttgaatgactattctac 403

                                                                       
Query: 425 tattaaaattctgtttagttcaaagcaaacagtaaaatttcaatggaaaaattttccttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tattaaaattctgtttagttcaaagcaaacagtaaaatttcaatggaaaaattttccttt 343

                                                                       
Query: 485 ggatagcagttctttgaaaacaaactgtcagttccatggaaactgaagcagctggttggg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggatagcagttctttgaaaacaaactgtcagttccatggaaactgaagcagctggttggg 283

                                                                       
Query: 545 gaaaggtgggataaagcatttcctatgaggatattagccactagatgagcttacctaaca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gaaaggtgggataaagcatttcctatgaggatattagccactagatgagcttacctaaca 223

                             
Query: 605 gtcattctattgactaaa 622
           ||||||||||||||||||
Sbjct: 222 gtcattctattgactaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1021
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1011
Effective search space:   618732
Effective search space used:   618732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)