XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGTTCCT
ACAGATGAACTTAAACAATTATATTTATCTATTCATCTGTCTAGGCCTGG
ACTTTTTAAAAAAAAACTATTGTGAATGATGTTGTTATGCACATGTGTGT
TCAAATTTGTGTGGTCATTGTTTCTAAGTATCCTTTTTTTAAAAAAAATA
TTTATTTTATATATGTGAGTACATTAGTCCTGTCTTCAGACAGGCTGGAA
GAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGTCTGCT
GGGAATTGAACTCAGGATCTCTGGAAGAACAGTCAGTGTTCTTAACTGCT
GAGTCATCTCTCCAGCCCCTAAGTATCCTAATTTTAACTGGAGATTTTTT
TTTTCATAAGTCACAACGATGTCTGTAGGCAACAACTTGTATAAGCAGCC
ATTTCTGAGCTGTATACAATGAGTAGAGTGGTCCACAGGTCTTGTTAATG
AGCAGTCAGGTTAAACGCTTTCAGGATATCTTGGCTTATAGAAACTTAGC
AGTTTGGGGAGCAGGTAGCTGGAAAAGACAAAAAACAAGAACCAAGAACT
AACACAACTTTTCATTAACATAAAGTATAAAAAACACCTGCTAAATAAAT
GTAAACTAGACCTTCTATCATTGAGTACCATCTGCCTTCTAAATTGAACA
AAAGCATGGTTTATTATTAGGAGATTTAACAATGGTCGAAAAATTTAAAC
GGACT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGA
TTTTGTTAAATGCTTTCTCCTTGTCTAAGGAGATGATCATGCGGTTTTTG
TCTTTGAGTTTGTTTATATAATGGATTACGTTGATGGATTTCTGTATATT
AATCCATCCCTGCATCCCTGCAATCAAGCCTACTTTCTCAGGTTGGATGA
TTGTTTTCATGTGTTCTAGGATTCAGTTAGCAAGAATTTTAATGAGTATT
TTTTCATCGATATTCATAAGGAAAATTGGTCTGAAGTTCTCTATCTTTGT
TGGGTCTTTCTGTGGTTTTGGTATCAGAGTAATTGTGACTTCATAGAATG
AATTGGGTAGAGTACCTTCTACTTCTATTTTGTGGAATAGTTTGTGAAGA
ACTGGAATGAGATCTTCTTTGAAGGTCTGATAGAACTCTGTACTAAACCC
ATCTGGTCCTGGGCTTTTTTTGGTTGGGAGATTATTAATGACTGCTTCTA
TTTCGTTTGTGGATATATGACTATTTAGATCATTAATCTCATCCTGATTT
AACTTTGGGACCTGTTATCTGGCTAGAAAATTTGCCATTTCATCCAGGTT
CTCCAGTTTTGGTGAAAAAACCTTTTTTATAAGAGAATACAAATGTGTTC
CTAGGTATATTTTTTTTCAAATTTTTTTTCGCTTTATTGGGAAAAAATAT
N

Query= MSMg01no346_h19.b1 MSMg01no346_h19.b1 CHROMAT_FILE:
MSMg01no346_h19.b1 PHD_FILE: MSMg01no346_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:11 2005
         (517 letters)



>mm_chrX_73317362_73318277
          Length = 916

 Score =  969 bits (501), Expect = 0.0
 Identities = 510/513 (99%), Gaps = 1/513 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggttcctacagatgaacttaaacaattatatttatctattcatctgtctaggc 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggttcccaaagatgaacttaaacaattatatttatctattcatctgtctaggc 264

                                                                       
Query: 65  ctggactttttaaaaaaaaactattgtgaatgatgttgttatgcacatgtgtgttcaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctggactttttaaaaaaaaactattgtgaatgatgttgttatgcacatgtgtgttcaaat 324

                                                                       
Query: 125 ttgtgtggtcattgtttctaagtatcctttttttaaaaaaaatatttattttatatatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtgtggtcattgtttctaagtatcctttttttaaaaaaaatatttattttatatatgt 384

                                                                       
Query: 185 gagtacattagtcctgtcttcagacaggctggaagagggcatcagatcccattacagatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagtacattagtcctgtcttcagacaggctggaagagggcatcagatcccattacagatg 444

                                                                       
Query: 245 gttgtgagccaccatgtgtctgctgggaattgaactcaggatctctggaagaacagtcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttgtgagccaccatgtgtctgctgggaattgaactcaggatctctggaagaacagtcag 504

                                                                       
Query: 305 tgttcttaactgctgagtcatctctccagcccctaagtatcctaattttaactggagatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgttcttaactgctgagtcatctctccagcccctaagtatcctaattttaactggagatt 564

                                                                       
Query: 365 ttttttttcataagtcacaacgatgtctgtaggcaacaacttgtataagcagccatttct 424
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttttttt-cataagtcacaacgatgtctgtaggcaacaacttgtataagcagccatttct 623

                                                                       
Query: 425 gagctgtatacaatgagtagagtggtccacaggtcttgttaatgagcagtcaggttaaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gagctgtatacaatgagtagagtggtccacaggtcttgttaatgagcagtcaggttaaac 683

                                            
Query: 485 gctttcaggatatcttggcttatagaaacttag 517
           |||||||||||||||||||||||||||||||||
Sbjct: 684 gctttcaggatatcttggcttatagaaacttag 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 916
Length adjustment: 10
Effective length of query: 507
Effective length of database: 906
Effective search space:   459342
Effective search space used:   459342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)