BAC Information

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BAC

Clone NameMSMg01-346P03
ChromosomeX (Build37)
Map Location 53,520,678 - 53,521,221
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254
Downstream geneLOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346P03.T7 (MSMg01no346_p03.b1)MSMg01-346P03.TJ (MSMg01no346_p03.g1)
ACCAG459410AG459411
length732741
length of high quality
(start - end)
618 (37 - 654)589 (67 - 655)
definitionCHROMAT_FILE: MSMg01no346_p03.b1 PHD_FILE: MSMg01no346_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:46 2005CHROMAT_FILE: MSMg01no346_p03.g1 PHD_FILE: MSMg01no346_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:46 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTA
AGAATGCTGCCTATTCAGTGACATTCAGAATTGCCTCTGGTATTATACTA
CCACTTTGAATAAAGGCTAAGTCACTGCCCTACACAGGAATTTATCATCA
TCTAGGAAGAAGGAAGTTTGAGACCTAAGGAGGAAGCAGAGTACATACTT
AGAACTATAGATTGCTGAGTTCCACACATATACACGTATTTACAATGGCC
TAGGGGGAAGGTGGACTATACAATAGACTAAAATAGGAACTATAGCAAGG
GCATGAAGCCATTGATCCTGGCTTCTAAGATTAAGTGGATCTTTGGTGGA
GCTCTTTTTGATCCCAGTTGTTAACAATGAATTGTATCCCAGGTGTTTCT
TGACAGACATTCTGTGTTTGTATTCCTCCGTTTTCTGTAAGAATCCAGTA
ACCTCTTTGTACCTTGCTTGTGTGTTACCCAACTTCCCTATTCTCTTCTG
TATAAAAAGTTTGATGCTCAATTTGACACTTTACATTCAGATTCTACACA
ACCTCTCCTGTGTGTATCTGTCTATCATTTCATCCAACGCTTTGCCCACC
TGTGACTAGAGATCCGTTCCACGCAGACAAAGGGGCCCAGAGTGTCTGCA
GCATTCTGCTTAGTGGCTAGTTCCCCATGGTTTCATGCTTTCTCATAGAG
AACTCATAACCACAAGCACTTGGATGGCAGCA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGGCAGTCTCATTTTTGATTTTTCCTGCTGCTAA
GACCACTAGTGTTCTCTGGTACATTCAAACTTACTGATCTCCAGGCGACT
AAACTTGTCAGGATCAGAGTGGAAACTGGATATTTTACAACCAATTATCT
GGTCCACTTGCCTACCTCTGGTTATCCCAGTTTCTCCACCTAAATTCGTT
ACTGATAATTTCCTCAGTATGCAGCCTGCCATGATTCACAGACAGGTACA
ACAACTGCTTCTGCCTCAGTATTAAATTCAAGTCCTTTCTCTTCTTCAGG
AATGTTAATATTTGACGATATACAAATGTATTTATCTAAGGAAGAATGGG
CTATGCTAACCCATGGAAGAAGACACTTTACAGTGTTGTAATGCTGGCCA
TCTACAAGCTAACCACCTGACTAGTTTAACTGGTTAACTATAACTCCTTT
CCTTTGTGTATACATTGTGTAACCTGGACTGTAACAGTGAAAAATATACT
CTGGGAGATATTGCCTTTTGGGTTATAATTGATTTAGATTGCTTCTTCAC
TGTTGAATCAGGAACTGCTACAGAAAAAAAAAATATTTTCTATGTTATTT
TTTTGCTTTGGGGTTGTTTGTTTCCCTTCGGTTTTTTAACCTACCACTTC
CTCGGCATAAACCTGGTCCCCTCCTAAGAAAAATCTGGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_p03.g1 MSMg01no346_p03.g1 CHROMAT_FILE:
MSMg01no346_p03.g1 PHD_FILE: MSMg01no346_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:46 2005
         (589 letters)



>mm_chrX_53520474_53521460
          Length = 987

 Score =  470 bits (243), Expect = e-136
 Identities = 476/559 (85%), Gaps = 24/559 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcagtctcatttttgattttt-cctgctgctaagaccactagtgttctctggtacatt 59
           |||||| |||||||| | ||||| |||||||||||| || ||||||||||  ||||||||
Sbjct: 205 aggcagcctcattttag-tttttccctgctgctaagccccctagtgttctggggtacatt 263

                                                                       
Query: 60  caaacttactgatctccaggcgactaaacttgtcaggatcagagtggaaactggatattt 119
           | | |||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct: 264 cgaccttactgatctccaggtgactagacttggcatgatcagagtggaaactggatattt 323

                                                                       
Query: 120 tacaaccaatt-atctggtccacttgcctacctctggttatc-ccagtttctccacctaa 177
            |||||| ||| | ||||||||||||||||| ||| || ||| | | |||||||||||||
Sbjct: 324 cacaaccgattca-ctggtccacttgcctacttctagtcatctcaaatttctccacctaa 382

                                                                       
Query: 178 attcgttactgataatttcctcagtatgcagcc--tgccatgattcacagacaggtacaa 235
           |||| |||||||||||||| |||  ||| ||||  || |||||||||||| |||| || |
Sbjct: 383 attctttactgataatttcttcaacatgaagcctatgtcatgattcacaggcaggcacta 442

                                                                       
Query: 236 caactgcttctgcct-cagtattaaattcaagtcctttctcttcttcagga-atgttaat 293
           |||||||||||| || ||||||||||||||||||| |||| ||||||||||  |||||| 
Sbjct: 443 caactgcttctg-ctgcagtattaaattcaagtccgttcttttcttcaggacttgttaac 501

                                                                       
Query: 294 atttgacgatatacaaatgtatttatctaaggaagaatgggctatgct-aacccatggaa 352
           |||||| ||| || ||||| | || ||| |||||||||||||||| || ||||| |   |
Sbjct: 502 atttgaagatgtagaaatgcaattctctgaggaagaatgggctatactgaaccctttcca 561

                                                                       
Query: 353 gaagacactttacagtgttgtaatgctggccatctacaagctaaccacctgactagttta 412
           ||||||||| ||||||| ||||||||||| ||||||||||||||||||||  ||      
Sbjct: 562 gaagacactctacagtgatgtaatgctggacatctacaagctaaccacct--ct------ 613

                                                                       
Query: 413 act-ggttaactataactcctttcctttgtgtatacattgtgtaacctggactgtaacag 471
            || || |||  |||||||||||||||| ||||||||||| ||||||||||||||  | |
Sbjct: 614 -ctagg-taaagataactcctttcctttttgtatacattgagtaacctggactgt-gc-g 669

                                                                       
Query: 472 tgaaaaatatactctgggagatattgccttttgggttataattgatttagattgcttctt 531
           ||||||||| || |||||||| ||  ||| ||||| ||||||||||||||||||||||||
Sbjct: 670 tgaaaaatacaccctgggagaaatcccctgttgggctataattgatttagattgcttctt 729

                              
Query: 532 cactgttgaatcaggaact 550
           |||||||||||||||||||
Sbjct: 730 cactgttgaatcaggaact 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 987
Length adjustment: 10
Effective length of query: 579
Effective length of database: 977
Effective search space:   565683
Effective search space used:   565683
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)