BAC Information

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BAC

Clone NameMSMg01-347A03
ChromosomeX (Build37)
Map Location 84,145,861 - 84,146,442
singlet/doubletsinglet
Overlap geneIl1rapl1
Upstream gene1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027
Downstream geneLOC667876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347A03.T7 (MSMg01no347_a03.b1)MSMg01-347A03.TJ (MSMg01no347_a03.g1)
ACCAG459456AG459457
length764754
length of high quality
(start - end)
307 (78 - 384)581 (77 - 657)
definitionCHROMAT_FILE: MSMg01no347_a03.b1 PHD_FILE: MSMg01no347_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:51 2005CHROMAT_FILE: MSMg01no347_a03.g1 PHD_FILE: MSMg01no347_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATCNCTTCCATAAGAACCAGACACTGATACTTTGATAACTA
ACATTAATCATCATGGCTTCCAAAGGATCGAAAGAAGATTTGAAAGGATG
AGGGGAGTTTCTTTTCTGGTAGTGTCTTTGTGGTGTTCTGCCGTCTTCTT
GTACCTGGAAAGGCATCTTCTTTTTTAGGTTAGGGAAATTTTCTTCTATG
ATTTCATTGAAAATACTTTCTGTGACTTTAGCCTGGGTACCATCTTCTTC
CTCTATTCCTATTATTTTTAGATTTGGTTGTTTCATAGTGCCTCACATTT
TCTATACCAGGAATTTTTAGATTTCCTAGACAAATGGTTGGACCTGAGTG
AGGTAACCCAATCACTATAGAACTCAAATGATATGTACTCACTGTATAAT
GGATATTATTCCAGACACTTATTATACTCCTGATATATGTTATTATTTGT
TCTCCCCTCGACTTCTCATTTCTAACGATTACTTTTTATTGCACACTTTG
CTTCTTTTTATAATTGTTTACCTCACCCTCTGTCCCTGTTTCATTCTTCA
CCTTTATTCCATTTTTCTACTCTTCTATGATTTCCCTCTTTTTTTGTCAT
ACTCCTTTTCTCTTTTCCCTTTTTTCCCCCTCCTATTTTCTTCTCCTCCT
CCTCCCTCTCTCTCTCCTTTTCTCTCTCCCCTTTTTCTCTTCTCTATCTC
TTTTTTTCTCTTCA
CCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACTTAGACTCAAGCTAATCCAA
GGGGAAGAGTTAAGTTTCATTCCTTAACATGACACAAATACATTTTGGTG
CATCTAAAGTTATCTTTAATGAATTTAACCTATGTATTTTGGCTTATGAC
TGTTTGATTCTCCAAACACAGGCTATCTCTGTCTCTGTCTCTCTCATTCT
CTCTCAAATACATAAGTATTCAAATACATATATACACATGAAAAAGATAA
TAATCTTTCTTGCTGAAACAGCAATCTAATATTATTTCCAAACACTTATA
CTTTTTAAATTTTGTAAGGTATTAAGACCATTCACTTAAAATTAATTCAA
TAAATACTATGGTATTTAAATAAAGAGAAATAAAAAAAAACTACCTCATC
AGTGAGTGTTACTTTAAAACTTAAAGAATAATATACAGCTTCACCCTATG
TTTCAAGAAAAGCAAAGGTTTTCTAAACTTTTCCTGATTCTTTAACCACA
AATCTCCTTTTAGACTAGACTCTATGCATGTAAAAGATACAGAGATTACT
GGAAAAGAAGTTGGGATAGGAACTATTGACATGACTTTTGTCTGAAAATC
ATTCCTTAGTGCTTAGCATATTTGGTTGAAACAGATGTTTGGAAGATGTT
TTGGACGCAGCATAACTAGCAGGAGAGTAAAGTTATGCCTGGACCCCTTT
AAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_a03.g1 MSMg01no347_a03.g1 CHROMAT_FILE:
MSMg01no347_a03.g1 PHD_FILE: MSMg01no347_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:51 2005
         (581 letters)



>mm_chrX_84145559_84146540
          Length = 982

 Score = 1102 bits (570), Expect = 0.0
 Identities = 579/582 (99%), Gaps = 1/582 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacttagactcaagctaatccaaggggaagagttaagtttcattccttaacatgacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 aaacttagactcaagctaatccaaggggaagagttaagtttcattccttaacatgacaca 825

                                                                       
Query: 61  aatacattttggtgcatctaaagttatctttaatgaatttaacctatgtattttggctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 aatacattttggtgcatctaaagttatctttaatgaatttaacctatgtattttggctta 765

                                                                       
Query: 121 tgactgtttgattctccaaacacaggctatctctgtctctgtctctctcattctctctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tgactgtttgattctccaaacacaggctatctctgtctctgtctctctcattctctctca 705

                                                                       
Query: 181 aatacataagtattcaaatacatatatacacatgaaaaagataataatctttcttgctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 aatacataagtattcaaatacatatatacacatgaaaaagataataatctttcttgctga 645

                                                                       
Query: 241 aacagcaatctaatattatttccaaacacttatactttttaaattttgtaaggtattaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aacagcaatctaatattatttccaaacacttatactttttaaattttgtaaggtattaag 585

                                                                       
Query: 301 accattcacttaaaattaattcaataaatactatggtatttaaataaagagaaat-aaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 584 accattcacttaaaattaattcaataaatactatggtatttaaataaagagaaataaaaa 525

                                                                       
Query: 360 aaaaactacctcatcagtgagtgttactttaaaacttaaagaataatatacagcttcacc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aaaaactacctcatcagtgagtgttactttaaaacttaaagaataatatacagcttcacc 465

                                                                       
Query: 420 ctatgtttcaagaaaagcaaaggttttctaaacttttcctgattctttaaccacaaatct 479
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctatgtttcaagaaaaacaaaggttttctaaacttttcctgattctttaaccacaaatct 405

                                                                       
Query: 480 ccttttagactagactctatgcatgtaaaagatacagagattactggaaaagaagttggg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ccttttagactagactctatgcatgtaaaagatacagagattactggaaaagaagttggg 345

                                                     
Query: 540 ataggaactattgacatgacttttgtctgaaaatcattcctt 581
           ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 344 ataggaactattgacatgaattttgtctgaaaatcattcctt 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 982
Length adjustment: 10
Effective length of query: 571
Effective length of database: 972
Effective search space:   555012
Effective search space used:   555012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)