XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TTTTAGTCCAGGAAACAGGATTCTTAAATGCTTATTAGAAAAAGTTCTGT
CCCAAGGAGATTTTTTTATCCATGCAAAGTCCCTAAAATGAATTTTTAGA
ATTAGAAATCATCTTTACTTAAACATGGTATGGATAAAGCCATCATTCAG
CAATTCATTAACCTGATTTTTTCATAGCTTCAAGAATAGGAGAAGGAATA
AAAAAATGGACACAATACAACATCTAAATTAACAAAATGTGATATCTGTG
TATTGGCTTCTAGGTTGCTAATTTTTCCACAGCAGACTGATGCTCATTAC
CCATTAGTTTGTCAGTAAGAAAGCCAAATATTTACATATCCTATTGTTTT
AGATATATCCTCAAGTAAACAAACATTTTTACATTTAGAGTCTGCGTGCT
TTGAAACTCCATCAAATACCACCCAAAATCTGCTAGCTGTAGATAAGCTT
CCGGACTGTACAAACCCTCTGTGCTGTTGGTGCTCTTTACAGCTCTCAAA
CCCAGACTCCACACTGGGCGGCTGGGCTGCCATCACTCACATATCCATCC
TCTTCAATTGCATCCTTCCAGAGATTTCCTCTTCTGAGTGATGATGATAC
CCCATTCTCTAAGTAAGTCATATTGTAAGTCCACAAGCAAACTGATATTC
TGAATATTCTACTATATGTGCTATGA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCACTAAAACGGTCTGGCATTGGACTTTT
TTGGTTGGGAGGTTTTTTGATAACTCTCTGTATTGTCTTAGGTGTTATAG
GACTGTTTAGATAGTTTACCTGACCTTGATTTGACTTTAGTACAGAAAGC
CATATAGATTTTTTCAGTTTTGTAGAGCTAAACGCTTTTGTAGTTGCTTC
AGATGATTTTCTTGAATTATCTCAGATTCTGTTGTTATGTCTCTTTTTCA
TTTCTGATTTTGTTAGTTTGGATACTGTCTCTGTGCTCTTTATTTAATTT
GGCTAAGTGTATATCATATCTATCTTGTTGATTTTCTTAGCAAACCAGCT
CTTGGTTTGTTGAGTTTTTGAATCATTCTCTTAGTTTCTAACCAGTTGAT
TTCAGCCCTGAGCTTGAAAATATCCTTACATCTACTCTTCTTTGGTGCAC
TTTGCTGCTTTCTGTTCTAGAGCTGTTAGGCATTCTTTTAACTTGCTTGT
ATAGGATCTCCTGTAAATTCCTTACAAAGGCATTTAATGCCACGAACTTT
TTCCTTTATGCTGTTTACACCCGGGCCCCATGAAATTTGGCACGACATGT
CCCCCCCTTAGTTGAACTCCCCACTTCTTGGAATTCTTTTCTAATTCCCC
CTGACTCTTTCTCTTTCCCCCAAAGTCCTTTAN

Query= MSMg01no348_l03.b1 MSMg01no348_l03.b1 CHROMAT_FILE:
MSMg01no348_l03.b1 PHD_FILE: MSMg01no348_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:04 2005
         (601 letters)



>mm_chrX_4668821_4669821
          Length = 1001

 Score = 1044 bits (540), Expect = 0.0
 Identities = 585/600 (97%), Gaps = 4/600 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattttagtccaggaaacaggattcttaaatgcttattagaaaaagttctgtcc 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattttagtccaggaaacaggatacttaaatgcttattagaaaaagttctgtcc 264

                                                                       
Query: 65  caaggagatttttttatccatgcaaagtccctaaaatgaatttttagaattagaaatcat 124
           |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 caaggagaattttttatccatgcaacgtccctaaaatgaatttttagaattagaaatcat 324

                                                                       
Query: 125 ctttacttaaacatggtatggataaagccatcattcagcaattcattaacctgatttttt 184
           ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 ctttaattaaacatggtatggataaagccatcatgcagcaattcattaacctgatttttt 384

                                                                       
Query: 185 catagcttcaagaataggagaaggaataaaaaaatggacacaatacaacatctaaattaa 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 catagcttcaagaataggagaaggaataaaataatggacacaatacaacatctaaattaa 444

                                                                       
Query: 245 caaaatgtgatatctgtgtattggcttctaggttgctaatttttccacagcagactgatg 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaaatgtgatatctgtgcattggcttctaggttgctaatttttccacagcagactgatg 504

                                                                       
Query: 305 ctcattacccattagtttgtcagtaagaaagccaaatatttacatatcctattgttttag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcattacccattagtttgtcagtaagaaagccaaatatttacatatcctattgttttag 564

                                                                       
Query: 365 atatatcctcaagtaaacaaacatttttacatttagagtctgcgtgctttgaaactccat 424
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atatagcctcaagtaaacaaacatttttacatttagagtctgcgtgctttgaaactccat 624

                                                                       
Query: 425 caaataccacccaaaatctgctagctgtagataagcttccggactgtacaaaccctctgt 484
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaataccacccaaagtctgctagctgtagataagcttccggactgtacaaaccctctgt 684

                                                                       
Query: 485 gctgttggtgctctttacagctctcaaacccag-act-ccacactgggcggctg-ggctg 541
           ||||||||||||||||||||||||||||||||| | | || ||||||||||||| |||||
Sbjct: 685 gctgttggtgctctttacagctctcaaacccaggatttcc-cactgggcggctgtggctg 743

                                                                       
Query: 542 ccatcactcacatatccatcctcttcaattgcatccttccagagatttcctcttctgagt 601
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 744 ccatcactcacatatccatcctcttcaactgcatccttccagagatttcctcttctgagt 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)