NNNNGGGGTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTA
CAGCAAACCAGTAGCCAACATCAAAGTAAATAGTGAGAAGCTGGAAGCAA
TCCCACTAAAATCAGGGACTAGACAAGGCTGTCCACTCTAGCCCTACCTA
TTAAACATTGTACTTGAAGTCCTAGCCAGAGTAATTTGACAACAAAAGGA
GATCAAGGGGATACAAATTGGAAAGGAAGAAGTCAAAATTTCACTTTTTG
CAGATGATATGCTAGTATATATAAGTGACCCTAAAAATTCTATCAGAGAA
CTCCTAAACCTGATAAACAGCTTCAATGAAGTACCTGGATATAAAATTAA
CTCAAAGAAGTCAATGGCCTTTCTCTACACAAAGGATAAACAGGCTGAGA
AAGAGATAGGGAAACAACACTCTTCTCAATAGTCACAAATAATATAAAAT
ACCTTGGCATGACTCTAACTAAGGAAGGGAAATATCTGTATTATAACAAC
TTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATTTCCGAAGATGGGAAGA
TCTCCCAAGCTCATGGATTGGCAGGATCAATATAGTAAAAATAGCTATTT
TTGCCTAAAGCAATGTGCAGAATCCATGCATTCCCCATCAAAATTCCACC
CAATTTTTTTCACCAATTATATAGGGGCATCCTGCCAAAATCT

NNNNNTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGCAGTAAGTCCA
GGACAAAGCATACAAACTATCTCTGCAACAGAATGAAGCTGTTCTACTGC
CAAGAACCACCATTCACTCCATCTAGTATTTTGAGAGGACAGTTAAGAAA
ACTGATACACATCAAGGGAAAAAAATTACTGCTGAGGTTGCCTACTTCTT
TACTTTTATTGAAGCATAGTTGATAAAAAAATTGTGTTTCTGTTCCACAT
CATGATGCTTGATTGATTTAGGTATTCATTATGAAATGAATTATAAACAC
TGTCACTTTATTATTCCCATTTATCTCACCTATCTACCAATTGGTATGTA
AAATTAGAGATCTATACCTAGCAAATTTCAAGTAACACACACACACACAC
ATATATATATACATATATATATATATACACACACACACACATACACACAC
AGAGACACATACGCATACATATGTAAAGTATAATTAAGTATAGTAACTCT
GCTATTCATTAGTACTTCAGAACTTAAAACTGTTAGCTGAAACATTCTAT
CACTTGATAAGAACCTTTCTATTCCCCCAATTACAGGCCTAGGTACTACC
ATTCCACCATCTCTGTCTATGGGGAAGTTTTTAAATTTCTGCTTACAGGT
TGGAACATGCATTATTTCCCCTCCCAACCTTTAGTGGTAAAATGAAATTT

Query= MSMg01no351_b05.g1 MSMg01no351_b05.g1 CHROMAT_FILE:
MSMg01no351_b05.g1 PHD_FILE: MSMg01no351_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:14 2005
         (478 letters)



>mm_chrX_143158716_143159593
          Length = 878

 Score =  750 bits (388), Expect = 0.0
 Identities = 473/542 (87%), Gaps = 64/542 (11%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttggcagtaagtccaggacaaagcatacaaactatctctgcaacagaatgaagctgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttggcagtaagtccaggacaaagcatacaaactatctctgcaacagaatgaagctgttc 260

                                                                       
Query: 61  tactgccaagaaccaccattcactccatctagtattttgagaggacagttaagaaaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactgccaagaaccaccattcactccatctagtattttgagaggacagttaagaaaactg 320

                                                                       
Query: 121 atacacatcaagggaaaaaaattactgctgaggttgcctacttctttacttttattgaag 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacacatcaagggaagaaaattactgctgaggttgcctacttctttacttttattgaag 380

                                                                       
Query: 181 catagttgataaaaaaa--ttgtgtttctgttccacatcatgatgcttgattgatttagg 238
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catagttgataaaaaaaaattgtgtttctgttccacatcatgatgcttgattgatttagg 440

                                                                       
Query: 239 tattcattatgaaatgaattataaacactgtcactttattattcccatttatctcaccta 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattcattatgaaatgaattataaacactgtcactttattattcccatttatctcaccta 500

                                                                       
Query: 299 tctaccaattggtatgtaaaattagagatctatacctagcaaatttcaagtaacacacac 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctaccaattggtatgtaaaattagagatctatacctagcaaatttcaagtaacacacac 560

                                                                       
Query: 359 acacacaca--------------------------------------------------- 367
           |||||||||                                                   
Sbjct: 561 acacacacacacacacacacacacacacacacacacacacatatatatatatatatatat 620

                                                                       
Query: 368 -------tatatatatacatatatatatatataca----cacacacacacatacacacac 416
                  |||||||||| |||||||||||||||||    |||||||||||| ||| ||||
Sbjct: 621 atatatatatatatatatatatatatatatatacatatacacacacacacacacatacac 680

                                                                       
Query: 417 agagacacatacgcatacatatgtaaagtataattaagtatagtaactctgctattcatt 476
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 agagacacatacgcatacatatgtaaagtataattaattatagtaactctgctattcatt 740

             
Query: 477 ag 478
           ||
Sbjct: 741 ag 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)