BAC Information

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BAC

Clone NameMSMg01-351D13
ChromosomeX (Build37)
Map Location 99,781,901 - 99,782,417
singlet/doubletsinglet
Overlap genePhka1
Upstream geneTaf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083, Rgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8
Downstream geneLOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351D13.T7 (MSMg01no351_d13.b1)MSMg01-351D13.TJ (MSMg01no351_d13.g1)
ACCAG462645AG462646
length726749
length of high quality
(start - end)		618 (55 - 672)517 (86 - 602)
definitionCHROMAT_FILE: MSMg01no351_d13.b1 PHD_FILE: MSMg01no351_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:25 2005CHROMAT_FILE: MSMg01no351_d13.g1 PHD_FILE: MSMg01no351_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAAAGAAGATACTCGAGCATCTTTGAGTTACTCGAGT
TGTGGTGAAACAGACACTAGGCAAGAATTGCCTCATTCATCTACAGTCAT
AATATTGTACAAAGAAAGGACACAGTTACAGGTTAGAACAGCTTGATTCT
GCCGAGACAGAGTAGGCTAGTCCTTGATATTCCTGTTTCTCTAAGTCCGT
CGGATGACCCAGGCCAATAAGCTGAAGACCGATGCTCCAACATGCTGAAG
TAAGGGGCTGTCCAGGTGATCAGTGGTCTCTATGGATTGGCTAAGTTTTG
GAAGCTGTTTTAGGCTTCCTATATATTTTCAGTTAATATCAGTTGTTCTT
GGATTTCTGGTGGGGATGAAAAACTACATAGTCTCCTAACCAACCCAGGC
TTTTTATTTTGAGAGGAACAGTTTTGAGAGGATGGTTTTCAGATAGCATT
CAATCTAAAGCCAAGACATAGGCAGATATAGGATTATAAGTCTTTTAAGT
AAGGGTAGATGACAGAGGTTCTGTTTAATTAACAAACATGATGGACTGGG
TATTAGGTCTCTTGTACGTTATAGATTACAAAATAGTAATAGTTATGTTC
AAATATGTCTGAGAGAAAATGGACTTTTAATTGGACAGAGAGGGTGAAAT
GTTGTGTATAGCCCTGGAGCTAATAT

NNNNTTTTCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATGAATCGGGGAT
TATTCTAGATTTTAAAAATTACATAACTAGGAAGGAAAAAACATGATTAG
AATATGAGACTGAGCTTTTTGGTTAGGTATCTATATGTGCCTACTAGATG
GCTCTTTGGGTATTTATCAGATTCCATGTTGAAATGGGAAATTTTAATCA
TGAGTCTTTTTCTGATAGTGCTGGTGAAAGCTGACTGTCCAGGCTCTTCA
ATATAAGTACACTTAATGTCAGTGCTAGGAGTATGAGGGTAGTATAGAAC
ATCTGAAACACCAGAGTTGTCCTATAGCTAGACAATGGAAGAAGGAGAGT
AAACTGAGGAGGAAGGTCTGAGTCAGCTGTATACAGGCCTGACAGTTGTG
GGTTTGCAGGGATGGTGGTTAAGGTACTAGAGATATAGAGATGAATAAAG
TAGTTTCTCCTGTAAGAATCTCTTAGTGTTATGGTAGAGGGGCATATGAA
TTCAATAGAAAATGACCTCCTAGGTAAATGGAGATATGTATAGAATATCA
TGAGACCACATAGAAGTGGCATTTACCTAGTCTGGAGTTAGGAAGGTTGG
CTTCCAAAAAGGTAAACTTTGGGGCAGAAAAAAATGGCTCACTAATTTAG
AAGCCCGGGTTGGTTTTCTTATAGGACCCCAATCCGTTTCCACTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_d13.g1 MSMg01no351_d13.g1 CHROMAT_FILE:
MSMg01no351_d13.g1 PHD_FILE: MSMg01no351_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:25 2005
         (517 letters)



>mm_chrX_99781701_99782617
          Length = 917

 Score =  977 bits (505), Expect = 0.0
 Identities = 514/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatgaatcggggattattctagattttaaaaattacataactaggaaggaaaaaacatg 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgaatcagggattattctagattttaaaaattacataactaggaaggaaaaaacatg 260

                                                                       
Query: 61  attagaatatgagactgagctttttggttaggtatctatatgtgcctactagatggctct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 attagaatatgagactgagctttttggttaggtatctatatgtgcctactggatggctct 320

                                                                       
Query: 121 ttgggtatttatcagattccatgttgaaatgggaaattttaatcatgagtctttttctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgggtatttatcagattccatgttgaaatgggaaattttaatcatgagtctttttctga 380

                                                                       
Query: 181 tagtgctggtgaaagctgactgtccaggctcttcaatataagtacacttaatgtcagtgc 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tagtgctggtgaaagctgactgtccaggctcttcaatatacgtacacttaatgtcagtgc 440

                                                                       
Query: 241 taggagtatgagggtagtatagaacatctgaaacaccagagttgtcctatagctagacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggagtatgagggtagtatagaacatctgaaacaccagagttgtcctatagctagacaa 500

                                                                       
Query: 301 tggaagaaggagagtaaactgaggaggaaggtctgagtcagctgtatacaggcctgacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggaagaaggagagtaaactgaggaggaaggtctgagtcagctgtatacaggcctgacag 560

                                                                       
Query: 361 ttgtgggtttgcagggatggtggttaaggtactagagatatagagatgaataaagtagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtgggtttgcagggatggtggttaaggtactagagatatagagatgaataaagtagtt 620

                                                                       
Query: 421 tctcctgtaagaatctcttagtgttatggtagaggggcatatgaattcaatagaaaatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctcctgtaagaatctcttagtgttatggtagaggggcatatgaattcaatagaaaatga 680

                                                
Query: 481 cctcctaggtaaatggagatatgtatagaatatcatg 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctcctaggtaaatggagatatgtatagaatatcatg 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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