BAC Information

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BAC

Clone NameMSMg01-352D09
ChromosomeX (Build37)
Map Location 108,615,386 - 108,615,896
singlet/doubletsinglet
Overlap geneRps6ka6
Upstream geneLOC668530, LOC100043316, Pou3f4, Cylc1, LOC100042872
Downstream geneEG664791, D030011N01Rik, LOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352D09.T7 (MSMg01no352_d09.b1)MSMg01-352D09.TJ (MSMg01no352_d09.g1)
ACCAG463394AG463395
length763778
length of high quality
(start - end)
515 (52 - 566)202 (82 - 283)
definitionCHROMAT_FILE: MSMg01no352_d09.b1 PHD_FILE: MSMg01no352_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:40 2005CHROMAT_FILE: MSMg01no352_d09.g1 PHD_FILE: MSMg01no352_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTGTAGCATTACGTTTAAAACCTTTGCTAAACCAGTAC
AACTCAGAACAGCGAAACTCAACTTTCAAGGCCGATTTTGCCATTAGGTT
GTTACAGTATAATCAAGCAAACCACAGGCCATTTCCTACTCTCCATTTTG
GAGGTATAGAGGTAGTTATTTTCCCAACACTATTACATAGATTATAATCA
TACTTGCTCTAAAAGGTTTGCTTCAAGTGTGACAGTTTGGAAGCAATTTT
AATTCTTAGTCTGAATGACCTCTCCATCTTCATGTGAAAAACCATTGTTT
GAATTACAGCTTTCGTGAGTCATATGGTATTTCGTTATTAGCAACCTGAT
GCTTCTGTGTGTTTTTCTTTTCTTTTATCTAGATATTCAACTGAAGAAAA
TTTAAAATTTTGACAAATTTCCAAATTCTCTTTAGTATTCTTAAACAGGA
AGGTTTAACCTGAGCCTCCTCACATCCCCTCTTANAAGTCCTTACGTAAA
AATTGGTAAATGAAGGACCCCAATCTTGCCATGTCAAATCTCTTTCTACT
TTGGTCTATCTCTAACATCTATTCAATCTGCCGTACCAGAGATCTTCTCT
TATTAAATTCCCGGTAATAACTCCACCTTTTATCCGCTTTTACAAAAATA
TTGCCTCCAAACCCCCCCGGTTCCCCCCAGGGAAGGAAGAAAGGAAAGTT
CCCTCTCCCCTCG
NNTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGNGAGAAAGAAGAGC
TTCTTAATTACCAAATTTAATGAAAGTTACAAACATGTTATATATATATA
TATATATATATATATATATATATATATATACATACATATATATATATACA
CACACATATATATATGTGTGTGTGTGTATATAGAGAGACAGACAGACAGA
TAGAGGAGGATAATAGTTTCATTTCAGAAAATATTTCAGATGAGAATACA
GGTTTAATGGACTAAAAGGGAGAAGCTATTTTAACCATTTTTTTTAATAT
AGCTATATCCTTCAAAACTAAACAGGAAGATGGTGGAAGAAAGATACCTA
AACTTTTCCTCTTTCTCCTCCAGTCTACAACAGAACATTAATTTCCCTGT
GGGGGCAATGATGACATAAAAAGGTAAGGGAGGCACTAGAAAATATTAGA
CTGAGATGACGCCCATTTCAGGAACGCTGATTTTTTGATTAGAAATCTGA
GCCCAACTCCGCAGAAGAGAGTATCTCCCCTCCGCATGTCTTTTTTCCTC
ACTTTTCGCCCGGCTCGCCCTTTCTCCCCGCCTTTCCCCCCCTTCCCCCC
TCTCCCCTCCTTTTTTCTCTTCCCTCATTTTCCTTCCATTTATTATGTTT
CTATTTTTTTTTTCTCTCCCCTTCCTGTGTCCCTCCGCCCCTTATCTGCC
GCTTTGGTTCCGTCTCCTTTTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_d09.b1 MSMg01no352_d09.b1 CHROMAT_FILE:
MSMg01no352_d09.b1 PHD_FILE: MSMg01no352_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:40 2005
         (515 letters)



>mm_chrX_108615182_108616096
          Length = 915

 Score =  975 bits (504), Expect = 0.0
 Identities = 509/511 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgtagcattacgtttaaaacctttgctaaaccagtacaactcagaacagcga 64
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 715 gaattcactgtagcattacgtttaaaacctttgctaaaccagtataactcagaacagcga 656

                                                                       
Query: 65  aactcaactttcaaggccgattttgccattaggttgttacagtataatcaagcaaaccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aactcaactttcaaggccgattttgccattaggttgttacagtataatcaagcaaaccac 596

                                                                       
Query: 125 aggccatttcctactctccattttggaggtatagaggtagttattttcccaacactatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aggccatttcctactctccattttggaggtatagaggtagttattttcccaacactatta 536

                                                                       
Query: 185 catagattataatcatacttgctctaaaaggtttgcttcaagtgtgacagtttggaagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 catagattataatcatacttgctctaaaaggtttgcttcaagtgtgacagtttggaagca 476

                                                                       
Query: 245 attttaattcttagtctgaatgacctctccatcttcatgtgaaaaaccattgtttgaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 attttaattcttagtctgaatgacctctccatcttcatgtgaaaaaccattgtttgaatt 416

                                                                       
Query: 305 acagctttcgtgagtcatatggtatttcgttattagcaacctgatgcttctgtgtgtttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 acagctttcgtgagtcatatggtatttcgttattagcaacctgatgcttctgtgtgtttt 356

                                                                       
Query: 365 tcttttcttttatctagatattcaactgaagaaaatttaaaattttgacaaatttccaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tcttttcttttatctagatattcaactgaagaaaatttaaaattttgacaaatttccaaa 296

                                                                       
Query: 425 ttctctttagtattcttaaacaggaaggtttaacctgagcctcctcacatcccctcttan 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 295 ttctctttagtattcttaaacaggaaggtttaacctgagcctcctcacatcccctcttaa 236

                                          
Query: 485 aagtccttacgtaaaaattggtaaatgaagg 515
           |||||||||||||||||||||||||||||||
Sbjct: 235 aagtccttacgtaaaaattggtaaatgaagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)