BAC Information

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BAC

Clone NameMSMg01-353L13
ChromosomeX (Build37)
Map Location 66,250,696 - 66,348,465
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040194, EG236844, LOC385372, LOC627888, LOC434788, Fmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255
Downstream geneAff2, EG666577, 1700020N15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353L13.T7 (MSMg01no353_l13.b1)MSMg01-353L13.TJ (MSMg01no353_l13.g1)
ACCAG464531AG464532
length751756
length of high quality
(start - end)		559 (53 - 611)473 (84 - 556)
definitionCHROMAT_FILE: MSMg01no353_l13.b1 PHD_FILE: MSMg01no353_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:40 2005CHROMAT_FILE: MSMg01no353_l13.g1 PHD_FILE: MSMg01no353_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,250,696 - 66,250,898)(66,347,993 - 66,348,465)
sequence
NNNAATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGTGATCTTTCTGATCATCCCATTTTGTTGTTTGGAAT
GCAGACACTTCATTTTAAGGTAAACTCACATTGTCATTCCTGTGCCTTCC
TGAAGGAAAAAGATGACCTCTATAGGAAGCGAACAGATCTAACTATGCAG
CTGTGTTTGATGCCACTGAAATGCCCTTTTGAAATTTTCTGCTTTAAAAA
CTAGGGAAATCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACA
GGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATA
ATATAAAATATCTTGGCGTGACTCTAACTAAGGGAGTGAAAGATCTGTAT
GATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAGGAAGATCTCAGAAG
ATGGAAAGATCTCCCATGCTCATGGATTGGCATGATCAACATTGTAAAAA
TGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAA
ATTCCAACTCAATTCTTCAACGAATTGGAAGGAACAATTTGCAAATTTGT
CTGGAATAACAAAAAACCTAGGATAGCACAAAGTCTTCTCCAGGATAAAA
GAACTTCTGGCGGAATCACCATGCCAGACCTAAAGCTTTACTACAGAGCA
ATTTGTGATAAAACTGCCTGTTACTGTTATATAGACCGACAAGTAAACCA
N

TTTTTTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGTACTGAGACAGT
AGGCAAATGCCAACATGTCTCCCCACCACTGGACATTGTGTACACTGAGT
TTCTTGAAACCTAAAAGTAATAATTGCCCTTCCTTATGAGGGTTATGCTA
CATTTTTATAATTTTGAAAAAGTTATTCTCATCTCAAATTTTCTCAATGT
ATGCTTTTGGTGTGAGAGCTAATTTGGTTCTCAGAATGAGTGGCTTTAGA
AATATCTAGATTAGGAAAGCACAATTTCAGTTATACCTGTGATGATATTT
TCTGTTGCTTGCAGGACATACACCTCAAAGTGTGCCACAATTCAGTGGAT
TGAGAGGATGAAAGGGAACAAATGCAGAAAATGGTAAAGTAATCTATTAT
CCCCCTCTCTTTGTCTTCTGACCTGCTATGATATGAAGTACAATCCCACA
TACAGACACACAAGCACACTACCACCACCATGGTCTCTCTGCTTCAAGGG
ACTGAGACCTCTAANATACAATGAAATGCATGCCTCTGCCTCANTTTAAT
CANGTCCCTAGAATTTTGCTTGCAGNGATGCAATGTAACTGCCACATTTG
ATAAAAAAGCTGTTTGTTGATGTGATCAAATTAAATACTGGAGAAGTGTT
ATTGGTACGGGGTCCACACCCCATGGTGGTGTTATAAAAAGAACCCCAAA
CCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_l13.b1 MSMg01no353_l13.b1 CHROMAT_FILE:
MSMg01no353_l13.b1 PHD_FILE: MSMg01no353_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:40 2005
         (559 letters)



>mm_chrX_66250492_66251450
          Length = 959

 Score =  393 bits (203), Expect = e-113
 Identities = 203/203 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgatctttctgatcatcccattttgttgtttggaatgcagacacttcatttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgatctttctgatcatcccattttgttgtttggaatgcagacacttcatttt 264

                                                                       
Query: 65  aaggtaaactcacattgtcattcctgtgccttcctgaaggaaaaagatgacctctatagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggtaaactcacattgtcattcctgtgccttcctgaaggaaaaagatgacctctatagg 324

                                                                       
Query: 125 aagcgaacagatctaactatgcagctgtgtttgatgccactgaaatgcccttttgaaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagcgaacagatctaactatgcagctgtgtttgatgccactgaaatgcccttttgaaatt 384

                                  
Query: 185 ttctgctttaaaaactagggaaa 207
           |||||||||||||||||||||||
Sbjct: 385 ttctgctttaaaaactagggaaa 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_l13.g1 MSMg01no353_l13.g1 CHROMAT_FILE:
MSMg01no353_l13.g1 PHD_FILE: MSMg01no353_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:40 2005
         (473 letters)



>mm_chrX_66347793_66348665
          Length = 873

 Score =  853 bits (441), Expect = 0.0
 Identities = 465/473 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagtactgagacagtaggcaaatgccaacatgtctccccaccactggacattgtgtac 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 673 caaagtactgagacagtaggcaaatgccatcatgtctccccaccactggacattgtgtac 614

                                                                       
Query: 61  actgagtttcttgaaacctaaaagtaataattgcccttccttatgagggttatgctacat 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 613 actgagtttcttgaaacctaaaagtaataattgcacttccttatgagggttatgctacat 554

                                                                       
Query: 121 ttttataattttgaaaaagttattctcatctcaaattttctcaatgtatgcttttggtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttttataattttgaaaaagttattctcatctcaaattttctcaatgtatgcttttggtgt 494

                                                                       
Query: 181 gagagctaatttggttctcagaatgagtggctttagaaatatctagattaggaaagcaca 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gagagctaatttggttctcagtatgagtggctttagaaatatctagattaggaaagcaca 434

                                                                       
Query: 241 atttcagttatacctgtgatgatattttctgttgcttgcaggacatacacctcaaagtgt 300
           ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 433 atttcaggtatacctgtgatgatattttctgttgcctgcaggacatacacctcaaagtgt 374

                                                                       
Query: 301 gccacaattcagtggattgagaggatgaaagggaacaaatgcagaaaatggtaaagtaat 360
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 373 gccaaaattcagtggattgagaggatgaaagggaacaaatgcagaaaatggtaaagcaat 314

                                                                       
Query: 361 ctattatccccctctctttgtcttctgacctgctatgatatgaagtacaatcccacatac 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caattatccccctctctttgtcttctgacctgctatgatatgaagtacaatcccacatac 254

                                                                
Query: 421 agacacacaagcacactaccaccaccatggtctctctgcttcaagggactgag 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agacacacaagcacactaccaccaccatggtctctctgcttcaagggactgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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