Query= MSMg01no354_i07.b1 MSMg01no354_i07.b1 CHROMAT_FILE:
MSMg01no354_i07.b1 PHD_FILE: MSMg01no354_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:41 2005
(693 letters)
>mm_chrX_88337481_88338575
Length = 1095
Score = 1253 bits (648), Expect = 0.0
Identities = 681/692 (98%), Gaps = 4/692 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtttttctctgtactgcagtttttaattggatctcttggttctctggagtcta 64
|||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 205 gaattctgttttgctctgtactgcagttttaaattggatcgcttggttctctggagtcta 264
Query: 65 acttcttgagttctttatatattttgaatattatccctctattggatgtaggattagtaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttcttgagttctttatatattttgaatattatccctctattggatgtaggattagtaa 324
Query: 125 agatcttttctcagtctgtaggatgcaacatatatttactctcataggtgctagctgtcg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agatcttttctcagtctgtaggatgcaacatatatttactctcataggtgctagctgtcg 384
Query: 185 -ttttggtttttttcctaccttagttgccagtttttttcttacacaaattggaaaaaaaa 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttttggtttttttcctaccttagttgccagtttttttcttacacaaattggaaaaaaaa 444
Query: 244 ttactgttctatgttgaagcaacaccattcatgttttccaatgctgtaaataacaacaaa 303
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 ttactgttctatgttgaagcaacagcattcatgttttccaatgctgtaaataacaacaaa 504
Query: 304 tgttgaacagaaaaaaaa-attttaagtaccctgacaccaattgctcaaatgtaaacagt 362
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgttgaacagaaaaaaaatattttaagtaccctgacaccaattgctcaaatgtaaacagt 564
Query: 363 aagaaaccatgaaatccacatgcaactaattttatcttagggtaggcattgagaatttga 422
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagaaaccatgaaatccacatacaactaattttatcttagggtaggcattgagaatttga 624
Query: 423 agttcactgtgttttcttcttctaaatttaaacattctctgtgggagagagaaagatggt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agttcactgtgttttcttcttctaaatttaaacattctctgtgggagagagaaagatggt 684
Query: 483 ccag-agtgttaggtggtaaaccaaagctcacaagtcaagataaaaattttgaaatgcct 541
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccagca-tgttaggtggtaaaccaaagctcacaagtcaagataaaaattttgaaatgcct 743
Query: 542 ctctccagccatgtgaaagggaaaaacaattgctgaggattgcagaactttgatcagcct 601
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 744 ctctccagcaatgtgaaagggaaaaacaattgctgaggattgcagaactttgatcagcgt 803
Query: 602 aattgcattgagaaaagatactcatactgactgctgaacttgtttgtaagctgtgcagag 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aattgcattgagaaaagatactcatactgactgctgaacttgtttgtaagctgtgcagag 863
Query: 662 aactccagagtacaaatctctacattatgtga 693
||||||||||||||||||||||||||||||||
Sbjct: 864 aactccagagtacaaatctctacattatgtga 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1095
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1085
Effective search space: 741055
Effective search space used: 741055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_i07.g1 MSMg01no354_i07.g1 CHROMAT_FILE:
MSMg01no354_i07.g1 PHD_FILE: MSMg01no354_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:41 2005
(580 letters)
>mm_chrX_88506308_88507287
Length = 980
Score = 893 bits (462), Expect = 0.0
Identities = 525/580 (90%), Gaps = 52/580 (8%)
Strand = Plus / Minus
Query: 1 caggatagccagggctatacagagaaagcctgtctcaaaaaaccaataaatgaatgaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 caggatagccagggctatacagagaaagcctgtctcaaaaaaccaataaatgaatgaatg 479
Query: 61 aatgaatgaatgaatgaatgaatgaataaataaataaataaataaataaataaataaata 120
|||| ||||
Sbjct: 478 aatg----------------------------------------------------aata 471
Query: 121 aataaataaataaataaataaatgtattaaataacaggagcctcattgcaccacacctac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aataaataaataaataaataaatgtattaaataacaggagcctcattgcaccacacctac 411
Query: 181 aggaggcgatgtaattctaagtaactaaagtgctaggaaacccttgctttcctgggatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aggaggcgatgtaattctaagtaactaaagtgctaggaaacccttgctttcctgggatca 351
Query: 241 ttaaaccttattcatatccaaaaccccttcatgataaaagtcatggaaagatcaagaatt 300
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttaaaccatagtcatatccaaaaccccttcatgataaaagtcatggaaagatcaagaatt 291
Query: 301 caaggcccatacacaaacataataaaagcaatctacagtaaaccattagccaacatcaaa 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 290 caaggcccatacacaaacataataaaagcaatctacagcaaaccattagccaacatcaaa 231
Query: 361 gtaaatggagagaagatggaagcaatcccactaaaatcagggactagacaaggctgccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gtaaatggagagaagatggaagcaatcccactaaaatcagggactagacaaggctgccca 171
Query: 421 ctttctccctacctattcaacattgtacttgaagtattagccagagcaatttgaaaacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ctttctccctacctattcaacattgtacttgaagtattagccagagcaatttgaaaacaa 111
Query: 481 aaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 aaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagat 51
Query: 541 gatatgattttatatataactgaccctaaaaattccacca 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 gatatgattttatatataactgaccctaaaaattccacca 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
