This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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search by nearby gene name.
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Search Result
BAC
Clone Name
MSMg01-354J16
Chromosome
X (Build37)
Map Location
61,564,801 - 61,565,278
singlet/doublet
singlet
Overlap gene
none
Upstream gene
LOC666729
,
EG627470
,
3830417A13Rik
,
Slitrk4
Downstream gene
LOC100040011
,
Ctag2
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC666729
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666729
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
EG627470
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:627470
MGI:3643199
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs
name
3830417A13Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:70696
MGI:1917946
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Slitrk4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:245446
MGI:2442509
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100040011
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040011
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
pseudo
: _no_value
name
Ctag2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:70062
MGI:1917312
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs, 1 Protein
name
EG627470
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94407498
GeneID:627470
MGI:3643199
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs
product
: predicted gene, EG627470
transcript_id
: XM_899948.2
name
3830417A13Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:58037214
GeneID:70696
MGI:1917946
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA 3830417A13 gene
transcript_id
: NM_027512.1
name
Slitrk4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142357201
GeneID:245446
MGI:2442509
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: SLIT and NTRK-like family, member 4
transcript_id
: NM_178740.4
name
EG627470
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:83001436
GeneID:627470
MGI:3643199
definition
codon_start
: 1
product
: similar to SPANX-N
protein_id
: XP_905041.1
name
3830417A13Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:58037215
CCDS:CCDS30166.1
GeneID:70696
MGI:1917946
definition
codon_start
: 1
exception
: mismatches in translation
product
: hypothetical protein LOC70696
protein_id
: NP_081788.1
name
Slitrk4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31982342
CCDS:CCDS30167.1
GeneID:245446
MGI:2442509
definition
GO_component
: GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0007409 - axonogenesis [Evidence IDA]
codon_start
: 1
note
: slit and trk like gene 4
product
: SLIT and NTRK-like family, member 4
protein_id
: NP_848855.2
name
LOC666729
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666729
definition
number
: 2
pseudo
: _no_value
name
LOC666729
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666729
definition
number
: 1
pseudo
: _no_value
name
LOC100040011
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040011
definition
number
: 1
pseudo
: _no_value
name
LOC100040011
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040011
definition
number
: 2
pseudo
: _no_value
name
LOC100040011
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040011
definition
number
: 3
pseudo
: _no_value
name
Ctag2
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:149271664
GeneID:70062
MGI:1917312
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs, 1 Protein
product
: cancer/testis antigen 2
transcript_id
: XR_035228.1
clone name
MSMg01-169H15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-170E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-128N18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-069I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-399K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-538I09
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-186N03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-420G21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-387H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-541E19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-541E22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-100K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-394B11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-123E02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-111J23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-335H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-427C03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-354J16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-481J19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-508L17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-508N24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-419J19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-209H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-183N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-406K18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-542E06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-124G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-328M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-361M22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-197G23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-070L10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-340F18
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-124B24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-151B04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-113D09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-169P21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-130I01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-086J01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-043K13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-238M03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-097C06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-081B11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-152C15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-102I07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-316I09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-101B08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-263G13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-110N21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-243G15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-118A12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-152E21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-289K21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-156G18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-308G15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-021C23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-182E13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-227P18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-252A02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-030N23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-125L09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-203N02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-350I23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-155P17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-274K17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-100J15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-157O17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-285I06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-256J01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-087N19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-207G11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-043D02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-214K13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-258M20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-104B03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-330I07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-009G19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-021F10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-216E08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-293H06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-209H10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-093H22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-076K07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-298B04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-023N09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-137J20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-185P17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-061F16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-096D14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-199D21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-120P08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-328A13
singlet/doublet
doublet
plural/unique
unique