Query= MSMg01no358_c02.b1 MSMg01no358_c02.b1 CHROMAT_FILE:
MSMg01no358_c02.b1 PHD_FILE: MSMg01no358_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:19 2005
(627 letters)
>mm_chrX_53992055_53993080
Length = 1026
Score = 1154 bits (597), Expect = 0.0
Identities = 615/621 (99%), Gaps = 1/621 (0%)
Strand = Plus / Minus
Query: 7 gaattcaggaccttgagtttaaatagagagtcctttaccatgaagctatctcactacagc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gaattcaggaccttgagtttaaatagagagtcctttaccatgaagctatctcactacagc 747
Query: 67 tggagagatgatggctcagcagtaaagagctccgactgctcttccagaggtcctgagttc 126
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 746 tggagagatgatggctcagcagtaaagagccccgactgctcttccagaggtcctgagttc 687
Query: 127 agatcccagcaaccacatgttggttcacgaccatctttaatgggatctgaggccctctct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agatcccagcaaccacatgttggttcacgaccatctttaatgggatctgaggccctctct 627
Query: 187 ggtgaagacagcagcagtgtactcatagacatatagaaaataaatctttttttaaaaaaa 246
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggtgaagacagcaacagtgtactcatagacatatagaaaataaatctttttttaaaaaaa 567
Query: 247 gaaaaaaagctatgtcacctgcccccaaacctgacatattgagggccaggccaccaaaag 306
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 566 gaaaaaaagctatgtcacctgccccaaaacctgacatattgagggccaggccaccaaaag 507
Query: 307 ttcaattcaatttagaaaaaaaaacaagaatccaagccagaattttgtcattaactgagc 366
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttcaattcaatttag-aaaaaaaccaagaatccaagccagaattttgtcattaactgagc 448
Query: 367 ctcattttcctcacctgtaaaaggaaggtgtgaattgctgctattgaaatccttactaat 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctcattttcctcacctgtaaaaggaaggtgtgaattgctgctattgaaatccttactaat 388
Query: 427 caggcagatagaagaggaacatgggcgagtccttcttcccttctgtatctagtggacagg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 caggcagatagaagaggaacatgggcgagtccttcttcccttctgtatctagtggacagg 328
Query: 487 agcaggccagatgacaaggccagctcccagcagcttcccccttcacctgcagtgtgcttg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agcaggccagatgacaaggccagctcccagcagcttcccccttcacctgcagtgtgcttg 268
Query: 547 tgacgagctagctgtgcagcaggaacccagtcttttgagagtttagaaaacctgagagga 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgacgagctagctgtgcagcaggaacccagtcttttgagagtttagaaaacctgagagga 208
Query: 607 gtttaaattgacaactttgga 627
|||||||||| ||||||||||
Sbjct: 207 gtttaaattggcaactttgga 187
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1026
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1016
Effective search space: 626872
Effective search space used: 626872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_c02.g1 MSMg01no358_c02.g1 CHROMAT_FILE:
MSMg01no358_c02.g1 PHD_FILE: MSMg01no358_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:19 2005
(596 letters)
>mm_chrX_53808593_53809588
Length = 996
Score = 1114 bits (576), Expect = 0.0
Identities = 588/594 (98%), Gaps = 4/594 (0%)
Strand = Plus / Plus
Query: 1 aaggctagctgtgtctacaagtgagttccatggtagccaaggctacacagtgaaatcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaggctagctgtgtctacaagtgagttccatggtagccaaggctacacagtgaaatcctg 264
Query: 61 tcttaaaaacaaacagcaagaagacagaaaccacattcttagcagcatttcctcccacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttaaaaacaaacagcaagaagacagaaaccacattcttagcagcatttcctcccacag 324
Query: 121 ggatgatgatgtccttcaaaaccatgctctgctcatttatttatttatttatttatttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggatgatgatgtccttcaaaaccatgctctgctcatttatttatttatttatttatttat 384
Query: 181 ttatttatttatttatttatttatttttgaaaaatggcaacctgataataaaatgagtat 240
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 ttatttatttatttatttattt----ttgaaaaatggcaacctgataataaaatgagtat 440
Query: 241 agatatgaagtttagactatctaaacagtatttaagtaaaagaacaaaatcaagagtcat 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 agatatgaagtttagactatctaaacagtatttaagtaaaacaacaaaatcaagagtcat 500
Query: 301 atactactggataggagtttgcatacaaaacaaagtaattgaaacagtataggacgggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atactactggataggagtttgcatacaaaacaaagtaattgaaacagtataggacgggag 560
Query: 361 caaggatgaacaaacaatggaaaggaacaaagagtctgagaacaagcgtgggggaaaaaa 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 caaggatgaacaaacaatggaaaggaacaaagagtctgagaacaagtgtgggggaaaaaa 620
Query: 421 tccactgggatcagcaaacctttgcagaaaagataattcatttcacagagacatggaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccactgggatcagcaaacctttgcagaaaagataattcatttcacagagacatggaaga 680
Query: 481 attcgaccttgactcctacttcacgggagatgtgaaataactaatatctattatagatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attcgaccttgactcctacttcacgggagatgtgaaataactaatatctattatagatat 740
Query: 541 ttgtggacttaggcaagcacagattgctttatgtttaaaaattgtgtgtgtgtg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgtggacttaggcaagcacagattgctttatgtttaaaaattgtgtgtgtgtg 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
