BAC Information

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BAC

Clone NameMSMg01-358M08
ChromosomeX (Build37)
Map Location 4,924,015 - 4,924,532
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724, LOC100043935, LOC668968, LOC546182
Downstream geneMycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751, Nudt10, Bmp15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358M08.T7 (MSMg01no358_m08.b1)MSMg01-358M08.TJ (MSMg01no358_m08.g1)
ACCAG468347AG468348
length734721
length of high quality
(start - end)
503 (32 - 534)537 (63 - 599)
definitionCHROMAT_FILE: MSMg01no358_m08.b1 PHD_FILE: MSMg01no358_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:07 2005CHROMAT_FILE: MSMg01no358_m08.g1 PHD_FILE: MSMg01no358_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:07 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCTTTCTTA
TTTCAACCCTTACCAAGTATCATTCAGCAGAAAGTTTTTCAGTTTTCATG
AGTATGTGGACTTTCTGTTGTTTTGGTTGTTATTGACATCTAGCCTTATT
CTGATGTTATCTGATAGAATGCATGTGAGTATTCCCATTTTCTTGTATCT
GTTGATGCTTTTGTTTTATGACCAATTATATTATCAGTTTTGAGGAATGT
TCCATGAGGAACTCAGAAGAATATATATTCTCTTGTTTTGGCATGAAATG
TTCTATTGATATCTATTAAATCCATTTGGGTCAAGACTTCTGTTAGTTTT
ACTGTGTCTCTTATTTTCTTTTTCTTTTTCTTTTCTTTTTTTTTTTTTTT
TTAGGGATGACCTGTTTCTGCACCTTAGTGGTCTCGGCTAGAAGACTTGA
AGACAGGCCAGCCCACAGATATAGTCATTTCTAATTTTATGTACTTGCAA
CTTGATCATACAGCATGCAAGAATGGGTTAGAGCCAATGAGATTTTAAAA
AAAATAATTGACAACATAAACAAAGGCAATTAAGTACACAACTGTGTTTC
AGAATTTATTATTGACGGTTACTTGAGATCAGGAGTTTCCAACTTCTTTT
GATGAAACTTTTACCTTGGGGTTATTTTTTTTTTTAAACTACTCCAATTC
TGGCCTTTCATTTTTTATATTCAGGGAATGTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXATTGCTAACCCTAGTGTCCAAAGCACATGACAACAGTA
AAGATCCTATCTTGCCCCTCCCACCATATGATTAACATCATTAATAAATT
TTCTGCTGTCTCAAGCAAATTCATTGGAGGTTAAATACCTTAACATTCAG
CTGGATGGTGATGGATCATGCCTTTAATCCCAGAACTCAGGAGGCAAATC
TAGGCATATCTCTGAGTTTGAGGTCAGCCTGGTCTATATAGTATGTCTCA
GGACAGCCAGGGCTACAGGGAGAGATCCTGTCTTGGAAAACAAATAAAAT
AATACAAATATAAATATAAACAAAACAATGCAACATTCTTAACTGGAAAG
TATTTGGCTATAGATGCTGAATGAAAGCCTTTTCTAAAGCTAAACTATAT
GCTGTCAGCAATTGGTAATTTATCTCCACAATACAATAATAAGAAATACT
GAAACTATGTGTACTTCCGTCTGATAGCACATAAGTCATTAATATACCAT
ACAGAATCAAAAATAATTGTCAGGGTATTCCTTCTAAATAAAATAATAAT
AATAAAAATAATTCCTTCTAAAGGCTCGGAATAATTTGTCCTGTGTGTCC
TTTGCTTCCACTTTTTTTTTTCTTCACACAAACAAAGTACCTTTCACGAA
AAAAAAAGTTATAAATTTNAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_m08.b1 MSMg01no358_m08.b1 CHROMAT_FILE:
MSMg01no358_m08.b1 PHD_FILE: MSMg01no358_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:07 2005
         (503 letters)



>mm_chrX_4923830_4924732
          Length = 903

 Score =  812 bits (420), Expect = 0.0
 Identities = 485/520 (93%), Gaps = 24/520 (4%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattctttcttatttcaacccttaccaagtatcattcagcagaaagtttttcagtttt 65
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 186 ggaattctttcttatttcaaccctgaccaagtatcattcagcagaaagtttttcagtttt 245

                                                                       
Query: 66  catgagtatgtggactttctgttgttttggttgttattgacatctagccttattctgatg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 246 catgagtatgtggactttctgttgttttggttgttattgacatctagccttatcctgatg 305

                                                                       
Query: 126 ttatctgatagaatgcatgtgagtattcccattttcttgtatctgttgatgcttttgttt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 306 ttatctgatagaatgcatgtgagtattcccattttcttgtatctgttgatgctt--gttt 363

                                                                       
Query: 186 tatgaccaattatattatcagttttgaggaatgttccatgaggaactcagaagaatatat 245
           ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 364 tatgatcaattatattatcagttttggggaatgttccatgaggaactcagaagaatgtat 423

                                                                       
Query: 246 attctcttgttttggcatgaaatgttctattgatatctattaaatccatttgggtcaaga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 attctcttgttttggcatgaaatgttctattgatatctattaaatccatttgggtcaaga 483

                                                                       
Query: 306 cttctgttagttttactgtgtctct--tattttctttttctttttcttttcttttttttt 363
           ||||||||||||| |||||||||||  |||||||||||||||||| |||| |||||||||
Sbjct: 484 cttctgttagtttcactgtgtctctgttattttctttttctttttttttttttttttttt 543

                                                                       
Query: 364 tttttttt--------------agggatgacctgtttctgcaccttag------tggtct 403
           ||||||||              |||||||||||||||||| |||||||      ||||||
Sbjct: 544 ttttttttttttttttttttttagggatgacctgtttctgtaccttagcactggtggtct 603

                                                                       
Query: 404 cggctagaagacttgaagacaggccagcccacagatatagtcatttctaattttatgtac 463
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 604 cggctagaagacttgaagacaggccagcccacagatataggcatttctaattttatgtac 663

                                                   
Query: 464 ttgcaacttgatcatacagcatgcaagaatgggttagagc 503
           ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 664 ttgcaacttgatcatacagcatgcaagaatgtgttagagc 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)