BAC Information

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BAC

Clone NameMSMg01-359N10
ChromosomeX (Build37)
Map Location 74,529,790 - 74,530,166
singlet/doubletsinglet
Overlap genenone
Upstream geneMagea7, 4930428D18Rik, EG544974, 4930468A15Rik
Downstream geneLOC385474, EG436208, LOC546331, LOC100041212, Tbl1x, EG628893, LOC667606, Prkx, Pbsn, OTTMUSG00000017866, LOC100042001, 5430402E10Rik, LOC628976, Obp1a, EG546335, EG628991, LOC236874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359N10.T7 (MSMg01no359_n10.b1)MSMg01-359N10.TJ (MSMg01no359_n10.g1)
ACCAG469158AG469159
length777767
length of high quality
(start - end)
379 (45 - 423)378 (58 - 435)
definitionCHROMAT_FILE: MSMg01no359_n10.b1 PHD_FILE: MSMg01no359_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:25 2005CHROMAT_FILE: MSMg01no359_n10.g1 PHD_FILE: MSMg01no359_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAACTCAGTATT
TAGGATCTAAACTTCAAGAAAGGAATGGAAAGAATCCAAGGTACCTACCC
AGAGTTTACAATTAGAGATTTCAGACACAGACCAGGTGAGGTGGCACAGG
CCCATCATCTCAGCTATTCAAGAGGATCACCTACTCAAGGCTAGCTTAGT
CAACCTGGTGAAGTCTTTGTCTCAGAATAAAATGGAGTTTGTGGATGTAG
CTCCATGGTTGAGTACTTTACCTACATCTCATATGTATAAGACCTAATAC
TTACTATCACACACAAATACAGAAAAATCTGGGGGCTGGAGAGGTAGTTG
GGCCAGCAAAGTCCTTGCAACACAAGCACGAGGACCTGAGTTTAATTCTC
AGAATGAACACACACACACACTAGCTGTACAAGTTGGCCAGGCAGTAGTG
GCACACACCTTTAATTCCAGCAGGGTCAGAAGCATGCATATGCCTGCGCT
CCATGCCTGTTTGGTTGGTCTACATAGCTAGTTCCAGAACAGTCAGGTTA
CACATACCCCGGGCTGGTGGTCAAAAAAACAAATGTGCGCCCGAGACGAC
CCTCCGGTCTAAATCTTCGGTCCTTTTTGGGCAACACCCCGCCCCCGTTT
TTCCCTTTTTTCCTATGCAANACCCGGGTTTCCTACTCTTTGCCGTCAAT
CCGCCTCTCCTTTCATCTCATTATTCTCCGCCCATTATTTTATCCGTCCT
CCTTTCATTGTTACTTTTTACCCTCGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGGGAACTATGTGTCCATCTTTACTTCTAGCATTAACAAGAGG
ATCCCATGACAATGAAAGATGGCAGCAGAAGCAGGAACAATAACAGCAAA
ATGCATGTACTTACCAACAAGGAGTAAAGGGGACGCAGTCAAAGCAGTCT
TGATTTTTTCTCAGACTCTTGATACATGGGCCACTGGCACTGTACTATCC
ACTCAGGGAAAAAGTCTTCTCTTTTGTGTAATGGTTTTCAGGAAATACCC
TCACAAAACCCAGATCTAATTAAGTTGAAAACAAGATTAATATCATACAT
AACTCTTAACATTTAGTATGGTGGTCATCTGCCATAAATGGCATTTACTC
CTCATTGGTGGAAATTTTTAGTTGCTTTTTTATTCTGTCACCCGCGCATG
TTTATACTGCACAATATTTGATACCCTGCCCCCACACCCTTTCCTTATTA
CTTTACCTCCCTTTCTGTCCTTTCATCCCCCTTTATTTCCCTTCCTTCTT
TTTGTCCATCATTTCTCTCCCTTCACTCTTTTATCTTTCCCCTTTTTTTT
CACTTCCTTTTTTTTTTATCTTCCCCTTTCTCCCCCCTCCCCCATATCAT
TCCTTTCTTCTCTCTCCCCTCTCTATATTTTCTCTCTTTACCCTTTTTTC
CTCTATTTTTTCTTTTTTACCCCCCTTTTTTTTTCTTTTCTCCTCCCCCT
TTTTTTTTTCCTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_n10.g1 MSMg01no359_n10.g1 CHROMAT_FILE:
MSMg01no359_n10.g1 PHD_FILE: MSMg01no359_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:25 2005
         (378 letters)



>mm_chrX_74529590_74530367
          Length = 778

 Score =  721 bits (373), Expect = 0.0
 Identities = 376/377 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggaactatgtgtccatctttacttctagcattaacaagaggatcccatgacaatgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggaactatgtgtccatctttacttctagcattaacaagaggatcccatgacaatgaaa 260

                                                                       
Query: 61  gatggcagcagaagcaggaacaataacagcaaaatgcatgtacttaccaacaaggagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatggcagcagaagcaggaacaataacagcaaaatgcatgtacttaccaacaaggagtaa 320

                                                                       
Query: 121 aggggacgcagtcaaagcagtcttgattttttctcagactcttgatacatgggccactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggggacgcagtcaaagcagtcttgattttttctcagactcttgatacatgggccactgg 380

                                                                       
Query: 181 cactgtactatccactcagggaaaaagtcttctcttttgtgtaatggttttcaggaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgtactatccactcagggaaaaagtcttctcttttgtgtaatggttttcaggaaata 440

                                                                       
Query: 241 ccctcacaaaacccagatctaattaagttgaaaacaagattaatatcatacataactctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctcacaaaacccagatctaattaagttgaaaacaagattaatatcatacataactctt 500

                                                                       
Query: 301 aacatttagtatggtggtcatctgccataaatggcatttactcctcattggtggaaattt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 aacatttagtatggtggtcatctgccataaatggcatttactcctcattggtggtaattt 560

                            
Query: 361 ttagttgcttttttatt 377
           |||||||||||||||||
Sbjct: 561 ttagttgcttttttatt 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)