BAC Information

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BAC

Clone NameMSMg01-360F22
ChromosomeX (Build37)
Map Location 134,510,160 - 134,510,626
singlet/doubletsinglet
Overlap geneIl1rapl2
Upstream geneLOC666244, 2810402A17Rik, Zcchc18, BC031748, LOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303
Downstream gene1700025D03Rik, Nrk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360F22.T7 (MSMg01no360_f22.b1)MSMg01-360F22.TJ (MSMg01no360_f22.g1)
ACCAG469561AG469562
length7721,068
length of high quality
(start - end)		484 (44 - 527)---
definitionCHROMAT_FILE: MSMg01no360_f22.b1 PHD_FILE: MSMg01no360_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:06 2005CHROMAT_FILE: MSMg01no360_f22.g1 PHD_FILE: MSMg01no360_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAGGATCTCCTAAAGGAGAAATATTTGGCCTTATCAACCCTAATAAA
GTTCATGGAAAACACCATCTGGTGAATGAAGGTACAGAAATTGACCTGGA
ATTCAGTTTAGTAGCAATGTAACACATTTTGTACTTATCTAGCACCTTAG
TTTCCATGTATTCCAACAAAAAGATCAGGAGGCAGAAATTAGTACAGAAA
AAAAAATGACTTATTTACACATTAGCCTAAGGAGGAAGATCTAATAATAT
ACATGAGCATGCATGCGTGCGTGCGTGCACACGCTGGCACACACACACAC
ACACACACACACACACACACACACACACACACACACACAAATGTACATAT
GTGTGTGTCTGTGTATATATACACAGAATATATATATATATATTACATAT
ATATATGTAATACACTGTATATATATGAAAGAGAAGGCAGGATATATGTG
AATTTTAATTTCATAATATATCCCTTTGTTTATTTTCTTGTGGNGCTATG
GATAGTACCCAGCAACTTGTAAGAGCTTAGCTAGGGCTCTTTCACTGTGN
TAACATGCCAGCCTAATACATAAACTTATCCCATTAGAAAGAAAAACTGA
TTCTTTCTAAAAAAACAATAACCCCTCCCAGTCCGTTTGGAAGATATGCT
TGTTTTGTTCCAACCCCAACCCCCAAAAAGGAGGAGGGGGACCCCACAGC
TTTAAACCTTTTTAAAAAAAAA

ACCCCCTGCAAGAAANNGAGGAGGGNNNNNCNGTTTTTTCAAACAAACGG
CAGATGTGAAAAAAGNNGATTGCAAACACACACACGAGGAGAAGAAAAAA
GAAAGCAAAAGAGCCAAGAGAAGAGACACCAGAAGGAAAACCCGCAAACC
AACAAACGGAGGAGGAACAGCCAAAACACGGACCAACAGAAAGACAAGGG
GAGGAGGGGAGGAGGCAACAAAAGCACCGCCGACCGCGGACACAGAGACA
GCGCAACACGAAACACCACGAGCCCGCACGAACAAGGAGCCNACANCGGA
ACCAAAAAATGTCTTTTGCTCACGNACGACCCTGCCAGCACCGCTAAACC
ACCACTTACCTCGCGTCCTATGATCATCTCATAGTCCTAATACTAACCTA
ATTTTTTCTTTATTTGCGCCCACCACTAGTTCTGCGTATACACACTTCCC
TTTCTTTACCCCTCACCATACATAAAGCATAATAAGAAGGAGGACGGCGT
ATACACATTAGATATTAATTAAATGATTCTCAANCCCCNCCTAANCCTCA
ATACTNATNNAATATAGCCAATCTCATCACANAACNTCACCCAAACAAGC
ATACCACCAAAACCTTCATTAAATCATCCCGCATTATTATTAATAAATTA
AAAACAATATCCCAACCTAACGCCACTATCATTAATACCTCGATTCAATC
ATATATTAGTACACCTAAATTTCTAAGTCTCCCTCTTCTACCGTCTTATA
CTATTACATAATACTCTCACATAATCCTATAATACGTAACTACANAATGC
CTACATCATCATCTACATATATCCCACTTATATCACCCCGCGNATATATA
CCNTATACAAACCACTATATTCATAATTACACCCGTGCACGACGACCACC
TCATTATAAGAATAACTGNTAACTACGACACAATATAATATCCTCTTACT
CTCTCGTAATCCAATATTCAACAACTCATAAATTACACGCTAACATATCA
TTATATATACGCTCACAATATCAATACACTCATAGCATTTATATCACATT
ATNACAATATTATCACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_f22.b1 MSMg01no360_f22.b1 CHROMAT_FILE:
MSMg01no360_f22.b1 PHD_FILE: MSMg01no360_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:06 2005
         (484 letters)



>mm_chrX_134509956_134510838
          Length = 883

 Score =  859 bits (444), Expect = 0.0
 Identities = 465/478 (97%), Gaps = 11/478 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggatctcctaaaggagaaatatttggccttatcaaccctaataaagttcatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggatctcctaaaggagaaatatttggccttatcaaccctaataaagttcatg 264

                                                                       
Query: 65  gaaaacaccatctggtgaatgaaggtacagaaattgacctggaattcagtttagtagcaa 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 gaaaacaccatctggtgaatgaaggtacagaaattgacctggaattcagtttagtagcga 324

                                                                       
Query: 125 tgtaacacattttgtacttatctagcaccttagtttccatgtattccaacaaaaagatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtaacacattttgtacttatctagcaccttagtttccatgtattccaacaaaaagatca 384

                                                                       
Query: 185 ggaggcagaaattagtacagaaaaaaaaatgacttatttacacattagcctaaggaggaa 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 ggaggcagaaattagtacagaaaaaaaa-tgacttatttacacattagcctaaggaggaa 443

                                                                       
Query: 245 gatctaataatatacatgagcatgcatgcgtgcgtgcgtgcacacgctggcacacacaca 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 gatctaataatatacatgagcatgcatgcgttcgtgcgtgcacacgctggcacacacaca 503

                                                                       
Query: 305 cacacacacacacacacacacacacacacacacacacacacaaatgtacatatgtgtgtg 364
           ||||||||||||||||||||||||||||||||          ||||||||||||||||||
Sbjct: 504 cacacacacacacacacacacacacacacaca----------aatgtacatatgtgtgtg 553

                                                                       
Query: 365 tctgtgtatatatacacagaatatatatatatatattacatatatatatgtaatacactg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tctgtgtatatatacacagaatatatatatatatattacatatatatatgtaatacactg 613

                                                                     
Query: 425 tatatatatgaaagagaaggcaggatatatgtgaattttaatttcataatatatccct 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tatatatatgaaagagaaggcaggatatatgtgaattttaatttcataatatatccct 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 883
Length adjustment: 10
Effective length of query: 474
Effective length of database: 873
Effective search space:   413802
Effective search space used:   413802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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