Query= MSMg01no360_i19.b1 MSMg01no360_i19.b1 CHROMAT_FILE:
MSMg01no360_i19.b1 PHD_FILE: MSMg01no360_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:19 2005
(640 letters)
>mm_chrX_98355411_98356450
Length = 1040
Score = 1162 bits (601), Expect = 0.0
Identities = 627/637 (98%), Gaps = 4/637 (0%)
Strand = Plus / Plus
Query: 6 gaattcattatgtttctcc--ggttagccctaaactattgattcttctgcttctacaggt 63
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcattatgtgac--caaggttagccctaaactattgattcttctgcttctacaggt 263
Query: 64 gtgtactaccatggcccttttagaattttgacttataattatttatctgctacatcctcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgtactaccatggcccttttagaattttgacttataattatttatctgctacatcctcc 323
Query: 124 aatgtctctcctaagtatgatctcatgatcacattttcctgtacttcattaacatatgga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatgtctctcctaagtatgatctcatgatcacattttcctgtacttcattaacatatgga 383
Query: 184 acacattcataactagctccatgtcatggttggctgattccatcatgcattttcttcctg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acacattcataactagctccatgtcatggttggctgattccatcatgcattttcttcctg 443
Query: 244 ggtaatctattaattgactttgcttataattatggtttacattcccttgctttgcatacc 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 ggtaatctattaattgactttgcttataattatggaaaacattcccttgctttgcatacc 503
Query: 304 taataatttgttactggatgtcagtgaattttgtggttttgggtgctgatgttttttctt 363
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 504 taataatttgttactggatgtcagtgaattttgtggttttgggtgctgattttttttctt 563
Query: 364 tattattcctttaaacatatttgaggttggttctgagatgcagttaggttccttagagat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tattattcctttaaacatatttgaggttggttctgagatgcagttaggttccttagagat 623
Query: 424 agtttctttgagacttgcttttaagttttattaaacaagcccagaggaacctttggccta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agtttctttgagacttgcttttaagttttattaaacaagcccagaggaacctttggccta 683
Query: 484 gagcaaacacgtccccactcttgaaataatacccttctaagtactcaaatcaacttccag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gagcaaacacgtccccactcttgaaataatacccttctaagtactcaaatcaacttccag 743
Query: 544 tgctttgcactctcagatctgctcctttctgatggttccttccctggtgtcaggttagca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgctttgcactctcagatctgctcctttctgatggttccttccctggtgtcaggttagca 803
Query: 604 cttcatgtgctgaggcactccctgctgcatactgtag 640
|||||||||||||||||||||||||||||||||||||
Sbjct: 804 cttcatgtgctgaggcactccctgctgcatactgtag 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_i19.g1 MSMg01no360_i19.g1 CHROMAT_FILE:
MSMg01no360_i19.g1 PHD_FILE: MSMg01no360_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:19 2005
(403 letters)
>mm_chrX_98554480_98555282
Length = 803
Score = 729 bits (377), Expect = 0.0
Identities = 396/403 (98%), Gaps = 2/403 (0%)
Strand = Plus / Minus
Query: 1 acaattgccatttgcttaagacctttctcccttcttggctctcaattcagtcttatcaga 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acaattgccatttgcttaaggcctttctcccttcttggctctcaattcagtcttatcaga 500
Query: 61 aagcccatgacagtaactaatgtgttttaagccccttgtgcaaccctggtggcttctgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aagcccatgacagtaactaatgtgttttaagccccttgtgcaaccctggtggcttctgga 440
Query: 121 atctcatccaagtcacctctagagtcatcctataattttacaaaagagagaaaataaata 180
||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 439 atctcattcaagtcacctctagagttatcctataattttacaaaagagaaaaaataaata 380
Query: 181 ggaaaaggatctcagaaatcctttgagatgtaacatgagagcaacggaacagcacatatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 379 ggaaaaggatctcagaaatcctttgagatgtaacatgagagcaacggaacaacacatatg 320
Query: 241 gctactggtgagagacacttcagtgagactctccaagagaagactataccaacacttagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gctactggtgagagacacttcagtgagactctccaagagaagactataccaacacttagg 260
Query: 301 tgtgtcttgtttctcccctgagcatttcaacttctttctttannaaaaaaaaaaaaaaaa 360
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 259 tgtgtcttgtttctcccctgagcatttcaacttctttcttta--aaaaaaaaaaaaaaaa 202
Query: 361 aaaaacttgccgggtgtggtggcgcacgcctttaatcccagca 403
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaacttgccgggtgtggtggcgcacgcctttaatcccagca 159
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
