BAC Information

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BAC

Clone NameMSMg01-360L09
ChromosomeX (Build37)
Map Location 7,664,963 - 7,665,394
singlet/doubletsinglet
Overlap geneWas
Upstream geneClcn5, Usp27x, 2010204K13Rik, LOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1
Downstream geneEG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn, Ftsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2, LOC546263, Ssxb6, Ssxb3, EG627853, EG627857, LOC668977, LOC631002, Ssx9, Ssxb5, LOC625480, EG436188, B630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360L09.T7 (MSMg01no360_l09.b1)MSMg01-360L09.TJ (MSMg01no360_l09.g1)
ACCAG469821AG469822
length784770
length of high quality
(start - end)
400 (45 - 444)433 (77 - 509)
definitionCHROMAT_FILE: MSMg01no360_l09.b1 PHD_FILE: MSMg01no360_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:32 2005CHROMAT_FILE: MSMg01no360_l09.g1 PHD_FILE: MSMg01no360_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGA
ATTCCTTCCTGTTCCCACTAACTCTACCTCCTGTGTGCTGGGATTAGATC
ACAGGCCACAAGGCCTGGTTTATACAACACTAGAGATAAAACCTAGGGCC
ACATGCATTCTTCCAACTGGGCTACGTCCCCAGTTCTACATGGCTTTTTT
TTTTTTTTTTTTGCTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCT
GTCCTGGAACTCACTTTGTAGACCAGACTGGCCTCGAACTCAGAAATCCG
CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCAAGCC
TGGCTTCTACATGGCTTTTTACAAATAAGTTTCTTTTTAATTTTTTAAAA
AAATTATGTCTATGCTATTTTGCCTCTCTATGTCTGCACCATGTGCATGG
CTAGTGTTCAGGAGGAATGCTAGGAAATACTCTACAGCCTTTCTTGTTTG
CTTGGTCCTTGAAACAGGGTTTCTCTTGTGTTAGGCCCGGTATCTCATAC
CATAAAGTAAGGTGGCCCTAGTACTGGAATCCATCTGCTTTTGGGCTTCT
AGATTCTGGGATAAAAGGGAAATGGTCCCAAATAGCCCCACCCCTTTTAC
TATTGGTTGTGATACCTCCTTTTTTTTAGCTAAGATATAATGTGGCGAGA
CAAAAAAATAACACTAGATGCTTTATTTCTCTTCTCCCATCTTTCCTAGA
GTGTTTCTTTTGGGCTGCCCTAACACTCTGATTT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATCACAAAAGTGGGATGAGAGAA
TATTCTATCCAAGGAAGATCAAATGATTAGGTGTGAATGAATGAATAACT
TAATAAGCTTTTTAGCCAACCAGCCAGAGAATGGATGAGTCAGTACTTGA
ATGGTAAAGACACATGAATTGATGACTCTTTCAGTGTTTTTTTTGGGATC
CATCCACCGCTCTGTAGGCCTTGTTTAGACCTCTCTCATCCGTTTCCTCC
ATGTCCATCAAACATATCCACAAACTTCTCCAATGAGCTTTCTATTTCTT
GCCCCTGGGCTTCGGCTAGTAAGTGCGTTGGCCAGTGGTTCATTCACCAT
TTTTCCACAGGCCCATCAGGTGGTCCACTATCTCTAGGACTTGTGACGGT
CGACATTCAGAACCCTGACATCACAAGTTCACGATACCGTGGGCTCCCTG
CACCTGGCCCTGGCCCAACTGATAAGAAACGCTCAGGGAAAAAGAAGATC
AGCATAGCTGATTCCGGACACCGAGTGGAATCACGTGAGAACTTCTTCCC
CTAAGATCCTCCATGTTTGGAACAATATCTCGACTTGATTCATAGGAACC
TCTGCCCTTATGTCGATTGTTTTTACCCAATCACTTGTCTGTATCACCTT
AATCCCTTTTCTCTTTTTTTACTTCTTCTTAATTTCCCTTTCACTTTCTA
CCTCTTTATCTTACTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_l09.g1 MSMg01no360_l09.g1 CHROMAT_FILE:
MSMg01no360_l09.g1 PHD_FILE: MSMg01no360_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:32 2005
         (433 letters)



>mm_chrX_7664763_7665594
          Length = 832

 Score =  814 bits (421), Expect = 0.0
 Identities = 430/433 (99%), Gaps = 1/433 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcacaaaagtgggatgagagaatattctatccaaggaagatcaaatgattaggtgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aatcacaaaagtgggatgagagaatattctatccaaggaagatcaaatgattaggtgtga 573

                                                                       
Query: 61  atgaatgaataacttaataagctttttagccaaccagccagagaatggatgagtcagtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atgaatgaataacttaataagctttttagccaaccagccagagaatggatgagtcagtac 513

                                                                       
Query: 121 ttgaatggtaaagacacatgaattgatgactctttcagtgttttttttgggatccatcca 180
           ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 512 ttgaatggtaaagacacatgaattggtgactctttcagtg-tttttttgggatccatcca 454

                                                                       
Query: 181 ccgctctgtaggccttgtttagacctctctcatccgtttcctccatgtccatcaaacata 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 453 ccgctctgtaggccttgtttagacctctctcatctgtttcctccatgtccatcaaacata 394

                                                                       
Query: 241 tccacaaacttctccaatgagctttctatttcttgcccctgggcttcggctagtaagtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tccacaaacttctccaatgagctttctatttcttgcccctgggcttcggctagtaagtgc 334

                                                                       
Query: 301 gttggccagtggttcattcaccatttttccacaggcccatcaggtggtccactatctcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gttggccagtggttcattcaccatttttccacaggcccatcaggtggtccactatctcta 274

                                                                       
Query: 361 ggacttgtgacggtcgacattcagaaccctgacatcacaagttcacgataccgtgggctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggacttgtgacggtcgacattcagaaccctgacatcacaagttcacgataccgtgggctc 214

                        
Query: 421 cctgcacctggcc 433
           |||||||||||||
Sbjct: 213 cctgcacctggcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 832
Length adjustment: 9
Effective length of query: 424
Effective length of database: 823
Effective search space:   348952
Effective search space used:   348952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)