NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTAAATATTACATACTTAAGATACTTTTTAATTTTGGGTATA
CTAGCAGATCACTGTACAATTCATCTTAATTGCTACTTTCTTAGCATACA
CACATACATGTACATATATATACATATATATATATATAATATAGTAACAT
ATGTCTTGTAATAATTTATATTTGTTTTTTGTGCTGCAAGCATTAATGCA
ACTATAATGCTAACATACTTCATAATGTCTAATAGAAAAGTAAAACTTAT
TTGGGTGATGTTAGGATCCACTTGTTTCCTGGTTCTCAGATATTTTGGAC
TACTCAATCTAAGTGCTAATGACGTAAAAGCCTCAAGAAGGAAGGACGAG
TCTTTAAAATGTATATGGAATAATTGTTTGTTCCAAGCCTATTTACTTTT
TCCATGTATCCCCACAGAAATCTTCACATAAAATTCTGTCTAAAATGTGA
TATCCTGTTATTTTTGACCTCAGATTAAAACATCTTGTTCCTTAGAAGGA
TTAATAGCACAAATAAACTATTAATGTTTTAGATCATTGAGTTTCCAGAA
TTGTTTCTTTTTAGTAACAAAAACTTTCTGGATTCATCCAGTTTCAGTTA
CTTTCTGTATATAAAAATATTCCACTAAATAGACTTTAAAATATGGGTTT
TTATTGGAGCAACCCAATTTGAGGTTCCAAAATTCTTTAGATGAATGCCT
GGAAAAAAAACCACAATTATATTTGTGGAAGCTCCAACT

NCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGGGCAGTGGGGTGGGATTGGGGGGG
TGAACACCCTCATAGAGGCAGGCGAGGGGGGATGGGATACCAGTTCTTCC
CTTCCCTCCCCCTCTCCTCCCTCCTCCTTTCCCTCCTTCCTCTCTTTTTT
TCCCTCCCCTTTTTCTCCCCCTCCCCCCCTCCCCTTTCCCCCCTCCCCCC
CTTCTCTCTCCCCCTTTTCCCCTCCCCCTTCTCTTCTTTCTCTCCTTCTT
TTCCTTTTTCCCTTTCCCCCCTTTTTCTTCCCCCTTTTCCCCTTCTCTCC
CTTTCTTCGCCTCCCCCCCCCCTCTTTTTCCCCCCTTCCCCTTTCCTTTC
TCTCCCTTTTTTCCCCCCCCCCCTCCCTCCCCACCCTTTTTCCCCCCCCC
CCTTTCCTCTTTACCTTCTCCCCTCTTTCCCTCCCCCCCTTCTTCCTCTC
CCCCCTTTTCCCTCCCCCCCCCTCCTCTTCCCCCTCCCCCCCCTCTTTTT
CCTCCCCCCCCCCCTCTCTTTTTTTTTTTCCCCCTCCCTCCTTCCTTTTC
CTCTCCCTTCCCCCCTTCTCCCTCTTCCTTCCCCCCCTCCTCCCTTCCCT
CCTTTTTTTTCCCTCTCTCTTCCTCTCTTCCCCTTCCTCCTCCCTTCTTT
TCCCCCCCCCCCCCCCTCCCCTTTCTCTCTCCCTCTCCTTCTTTCCCTCC
CCTCTCCTCTTCTTCCCCCTCTTCTTTTCCTCTCCTTTTTCTCCCTCCTC
CCGCCTTTTCCCTCTCCCTCCCGCTCCCCCTTCTTTTCTCTCCC

Query= MSMg01no361_b24.b1 MSMg01no361_b24.b1 CHROMAT_FILE:
MSMg01no361_b24.b1 PHD_FILE: MSMg01no361_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:04 2005
         (551 letters)



>mm_chrX_77822529_77823479
          Length = 951

 Score =  982 bits (508), Expect = 0.0
 Identities = 541/556 (97%), Gaps = 9/556 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttaaat-attacatacttaagatactttttaattttgggtatactagcagatc 63
           ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 902 gaattctttaaataaatacatacttaagatactttttaattttgggtatactagcatatc 843

                                                                       
Query: 64  actgtacaattcatcttaattgctactttcttagcatacacacatacatgtac----ata 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||
Sbjct: 842 actgtacaattcatcttaattgctactttcttagcatacacacatacatgtacatatata 783

                                                                       
Query: 120 tatatacatat----atatatatataatatagtaacatatgtcttgtaataatttatatt 175
           |||||||||||    ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 782 tatatacatatatacatatatatatagtatagtaacatatgtcttgtaataatttatatt 723

                                                                       
Query: 176 tgttttttgtgctgcaagcattaatgcaactataatgctaacatacttcataatgtctaa 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tgttttttgtgctgcaagcattaatgcaactataatgctaacatacttcataatgtctaa 663

                                                                       
Query: 236 tagaaaagtaaaacttatttgggtgatgttaggatccacttgtttcctggttctcagata 295
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 662 tagaaaagtaaaacttatttgggtgatgttaggaaccacttgtttcctggttctcagata 603

                                                                       
Query: 296 ttttggactactcaatctaagtgctaatgacgtaaaagcctcaagaaggaaggacgagtc 355
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 602 ttttggactactcaatctaagtgctaatgatgtaaaagcctcaagaaggaaggacgagtc 543

                                                                       
Query: 356 tttaaaatgtatatggaataattgtttgttccaagcctatttactttttccatgtatccc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tttaaaatgtatatggaataattgtttgttccaagcctatttactttttccatgtatccc 483

                                                                       
Query: 416 cacagaaatcttcacataaaattctgtctaaaatgtgatatcctgttatttttgacctca 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cacagaaatcttcacataaaattctgtctaaaatgtgatatcctgttatttttgacctca 423

                                                                       
Query: 476 gattaaaacatcttgttccttagaaggattaatagcacaaataaactattaatgttttag 535
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 422 gattaaaacatcttgttccttagaaggattactagcacaaataaactattaatgttttag 363

                           
Query: 536 atcattgagtttccag 551
           ||||||||||||||||
Sbjct: 362 atcattgagtttccag 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)