BAC Information

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BAC

Clone NameMSMg01-361D22
ChromosomeX (Build37)
Map Location 56,259,358 - 56,447,426
singlet/doubletdoublet
Overlap geneFgf13
Upstream geneZic3, LOC631581, LOC631621, 4930550L24Rik
Downstream geneF9, EG434782, Mcf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361D22.T7 (MSMg01no361_d22.b1)MSMg01-361D22.TJ (MSMg01no361_d22.g1)
ACCAG470225AG470226
length775792
length of high quality
(start - end)		523 (49 - 571)488 (79 - 566)
definitionCHROMAT_FILE: MSMg01no361_d22.b1 PHD_FILE: MSMg01no361_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:13 2005CHROMAT_FILE: MSMg01no361_d22.g1 PHD_FILE: MSMg01no361_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,259,358 - 56,259,874)(56,446,939 - 56,447,426)
sequence
NNCCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCAGATACACGAGGCTGACTTCAAATGTGTAGCTATCCTCC
TACCACTGCCTCCCAATGCTGGGATTAAAGATGTGTGCCATCACATAAGA
ACAATACTTTAATGTACCTCTCTTAATATCATGCTAGTAGAGCTCTGAAA
ACTCTGACCTTTCAAGATCTCTAGGTCACTCTCCTTGTGCAATTGTTCAT
GTGTAAAAACGAGCTTAGTGGAATGTTGTTTGTCCTCTGAGAAAGTAGTA
TCACAAATATTGGGCTATTGGATTACTAAATGATGATTTATGAATTTTTG
GTATTTATGTAAAGGAAGGGAACAAAACATGAAATGTAATCAAAAATTTC
TGTGCCTTGTTTTATATCCTAAGACAAGTTTGATTATTAGGAAGATGAGC
TACTGAATATATACAAAGAGAGTGGACCGGGCAGTATTGAAGTGTTGCTT
GCATCCCACATTTTCTAAATGTAGAGAACATCCTCTTTTCAGTGTCCTAA
ACATGAAAGTAAAGCTATAAAATTAAAACCTGGAATTANGCATTCAGACT
ACCATCTTATTAGAATACAATATCTAAGAGATCATGTATACTATAATCTG
AGAAACAATGAAACAAAAAAGTTTCAATCTCCCTGGAAAGTTGTACTTTC
TAATGTTTAAAATGAATACCAACCTCCCTGGGTTTGAAAAACCCTATGAA
GGGAAAATAATTGTTTTCTTTCCCG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGATAGCCACCTGTGGACTTA
ATGAATTAGAAGTAGGGTATTATTCAGGTGAAAATTTAGTTAAGGTAAAT
GTCATCTTAGTAATACATCTGAGTCATCGCTCATTGATGATTTGGAAAAT
GAAGAATAAAATATTTAAGATGTCAAAGACAGACTAGCTCCTTCTTATTT
GGAACTTATCATCTTTTCTTAGTATGCCAGCTTGGTATTTTTAGTTCTTA
TAACGATTAATTTACTAAAAAGTAATAAATCATTTAAAGGTCATAAAGAA
TATAGGTAGTTCTAGAGCTCGTGAGAGTTGTTTATTTTCTATTAAATTGA
GTAAATAAAATTTCTGATAATTTTAACTTAAAACAATATAAGATAATATA
AAGCACTACACACACATATCATATATATTTCATATCACTTAAGTTAAAAA
TATAACCCAGGAGCCAGACATGATCTCTACCTTTAACCCTACTATTTAGG
TGATAGAAGCAGAGAACCATGAGTTCAAATGAATCTGGGCTCCATGTCAA
CCTCAAAGCACCCTGAAGCTAATTATTCAGGCTTTATTCTAAAAGTAAAG
GGAGAATTTGTGGCTCACTCTTAAAAGGGTTGGGTAAGAAGTCCAAGCCC
CCAGTTTCGATCCCCACCACCACCAGAAAACTCCGGCTATTTTTTGTGTG
GAGGAGACAAATAAAAAAGGGGTTCCCATTTTCAAATTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_d22.b1 MSMg01no361_d22.b1 CHROMAT_FILE:
MSMg01no361_d22.b1 PHD_FILE: MSMg01no361_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:13 2005
         (523 letters)



>mm_chrX_56259155_56260077
          Length = 923

 Score =  946 bits (489), Expect = 0.0
 Identities = 510/517 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcagatacacgaggctgacttcaaatgtgtagctatcctcctaccactgcct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcagatacacgaggctgacttcaaatgtgtagctatcctcctaccactgcct 263

                                                                       
Query: 64  cccaatgctgggattaaagatgtgtgccatcacataagaacaatactttaatgtacctct 123
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cccaatgctgggattaaagacgtgtgccatcacataagaacaatactttaatgtacctct 323

                                                                       
Query: 124 cttaatatcatgctagtagagctctgaaaactctgacctttcaagatctctaggtcactc 183
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 cttaatatcatgctagtagagctctgaaaactctaacctttcaagatctctaggtcactc 383

                                                                       
Query: 184 tccttgtgcaattgttcatgtgtaaaaacgagcttagtggaatgttgtttgtcctctgag 243
           ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 384 tccttatgcaattgttcatgtgtaaaaccaagcttagtggaatgttgtttgtcctctgag 443

                                                                       
Query: 244 aaagtagtatcacaaatattgggctattggattactaaatgatgatttatgaatttttgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaagtagtatcacaaatattgggctattggattactaaatgatgatttatgaatttttgg 503

                                                                       
Query: 304 tatttatgtaaaggaagggaacaaaacatgaaatgtaatcaaaaatttctgtgccttgtt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 504 tatttatgtaaaggaagggaacaaaacatgaaatgtaatcaaaaatttctgggccttgtt 563

                                                                       
Query: 364 ttatatcctaagacaagtttgattattaggaagatgagctactgaatatatacaaagaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttatatcctaagacaagtttgattattaggaagatgagctactgaatatatacaaagaga 623

                                                                       
Query: 424 gtggaccgggcagtattgaagtgttgcttgcatcccacattttctaaatgtagagaacat 483
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 gtggaccgggcagtattgaagtgttgcttgcatcccacattttctaaatgaagagaacat 683

                                                
Query: 484 cctcttttcagtgtcctaaacatgaaagtaaagctat 520
           |||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctcttttcagtgtcctaaacatgaaagtaaagctat 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_d22.g1 MSMg01no361_d22.g1 CHROMAT_FILE:
MSMg01no361_d22.g1 PHD_FILE: MSMg01no361_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:13 2005
         (488 letters)



>mm_chrX_56446739_56447626
          Length = 888

 Score =  936 bits (484), Expect = 0.0
 Identities = 487/488 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgatagccacctgtggacttaatgaattagaagtagggtattattcaggtgaaaattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttgatagccacctgtggacttaatgaattagaagtagggtattattcaggtgaaaattta 629

                                                                       
Query: 61  gttaaggtaaatgtcatcttagtaatacatctgagtcatcgctcattgatgatttggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gttaaggtaaatgtcatcttagtaatacatctgagtcatcgctcattgatgatttggaaa 569

                                                                       
Query: 121 atgaagaataaaatatttaagatgtcaaagacagactagctccttcttatttggaactta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atgaagaataaaatatttaagatgtcaaagacagactagctccttcttatttggaactta 509

                                                                       
Query: 181 tcatcttttcttagtatgccagcttggtatttttagttcttataacgattaatttactaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tcatcttttcttagtatgccagcttggtatttttagttcttataacgattaatttactaa 449

                                                                       
Query: 241 aaagtaataaatcatttaaaggtcataaagaatataggtagttctagagctcgtgagagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaagtaataaatcatttaaaggtcataaagaatataggtagttctagagctcgtgagagt 389

                                                                       
Query: 301 tgtttattttctattaaattgagtaaataaaatttctgataattttaacttaaaacaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgtttattttctattaaattgagtaaataaaatttctgataattttaacttaaaacaata 329

                                                                       
Query: 361 taagataatataaagcactacacacacatatcatatatatttcatatcacttaagttaaa 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 328 taagataatataaagcactacacacacatatcatatatagttcatatcacttaagttaaa 269

                                                                       
Query: 421 aatataacccaggagccagacatgatctctacctttaaccctactatttaggtgatagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aatataacccaggagccagacatgatctctacctttaaccctactatttaggtgatagaa 209

                   
Query: 481 gcagagaa 488
           ||||||||
Sbjct: 208 gcagagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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