BAC Information

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BAC

Clone NameMSMg01-361P11
ChromosomeX (Build37)
Map Location 89,538,699 - 89,539,119
singlet/doubletsinglet
Overlap geneMageb18
Upstream geneMageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, EG436259, EG668061
Downstream geneEG546347, LOC629568, LOC100042663, Rp23-438h3.2, Arx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361P11.T7 (MSMg01no361_p11.b1)MSMg01-361P11.TJ (MSMg01no361_p11.g1)
ACCAG470765AG470766
length745774
length of high quality
(start - end)
463 (71 - 533)---
definitionCHROMAT_FILE: MSMg01no361_p11.b1 PHD_FILE: MSMg01no361_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:09 2005CHROMAT_FILE: MSMg01no361_p11.g1 PHD_FILE: MSMg01no361_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCANACTATTCCCGGGGTACCTGGCATCTGGATATTAGGTAATA
TTGAGATTATATTTAATGTATTCTAAGTGCATATTCTTTTTTTAATTTAT
TAGGTATTTTCTTCATTTACATTTCCAGTGCTATCCCCAAAGTTCCTATA
CCCCCTCCACTCCCCTACCCACCCACTCCCACTTCTTGGCCTTGGCGTTC
CCCTGTACTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTTCC
AATGATGGCCGACATGCATATTCTAATTAAGGGGAAAAGGCACCATGTTG
GATTTTTAAAGTTTATAAGGGGAAATATCAGAATTACCAAATATCAAGTA
TAGAATTTTAAAAAAATACATGTCTTATTTAACTTAAGTTTATGAAGCAC
AAACCACACCCTCAATAACTGCTGCTATACTAAACTGGCTATATTAATCA
TATTTGGATTCTGCTGTTTGATTTGAGTCTAACACCTGGTACATGCTGTG
AGGGATTCACTGGAAGCTATAGGTTATATGAAAGTGGACCATTAAACTCC
TTAAGATTCACCGGACTCTTGGATGTCTATATGATTCCACTATAACACTA
CTTATGGATCATGTTTAAAAGCCTCATAATCCACTTGCCAGTCTTTCTGT
GGTTTATGCATCTTTGTCCCTATGATTCCACTTCATTCTCTCCTC
TCCCAATTTTAAGGGTAAGCCGGGTGTCCGCTTGTCCCTCAAATTTAGGG
GAATTATAAAAGGTCCCGCGAAATTCTGTGTAAAACCATTTGTCCCTGAC
CTTTCTTTGTTTGGCAGGTTTTAATGACTGTTTCTGTTCCACTAAGAGTT
ATATAGGTCTGTTTCAATTGCTTATCTGACCTTGATTTAACTTTATTAAG
GGTAATCTACTGAGAATTTATCCCTAATTTGTTGAGTACAGTATTTTTTT
TTCCTTCTCTTACCTATGTAGTTATGCTTATCTCAATTTCCTTGGTGTTG
ATTGAAAGGTCCCCCTTCCCATTTCTATTTTTTAAAGGGATTTCTCAACC
TTTTATTTAATTTGGATAACTATTTGTAAATCATATTGACTTCCTCACAT
CACCAATGTTTCTTGATAATTTATTGCATTTATGTTGTCGAGGATTTTAT
TTTTATAGAATTCTGTCTTGAGTTTGATATACTTTTCAACTTTTAAAACT
TCTGGATAGCGACTTCTTATTTTCTTCGTCCCACACCTTTAACCCGTACC
CGTTCCCTCTATTTCTTTCCCACCCCACTTCATTCCATTTCCCTATCTCC
ACTCCCTTTTCATCTCTTTTCCCCCCTCTATTTTCCCCTTTGTTTCCCCT
ACCTTCCCCCTTTTCCCCCTTTCCCCCCCTGCCTTTGTTCCCCCTTATCC
CCTTCCCCCCCCTTCTCCCCCCCTCCTTTCTTCCCCTCTCTCCCCCCCCT
TTCTTTTCTTCTAATCCCATTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_p11.b1 MSMg01no361_p11.b1 CHROMAT_FILE:
MSMg01no361_p11.b1 PHD_FILE: MSMg01no361_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:09 2005
         (463 letters)



>mm_chrX_89538256_89539119
          Length = 864

 Score =  752 bits (389), Expect = 0.0
 Identities = 413/423 (97%), Gaps = 5/423 (1%)
 Strand = Plus / Minus

                                                                       
Query: 43  ttaatgtattctaagtgcatattctttttttaatttattaggtattttcttcatttacat 102
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ttaatgtattctaagtgcatattctttttttaatttattaggtattttcttcatttacat 805

                                                                       
Query: 103 ttccagtgctatccccaaagttcctataccccctccactcccctacccacccactcccac 162
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttccagtgctatccccaaagttcctataccccctccactcccctacccacccactcccac 745

                                                                       
Query: 163 ttcttggccttggcgttcccctgtactgaggcatataaagtttgcaagaccaaggggcct 222
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 744 ttcttggccttggtgttcccctgtactgagacatataaagtttgcaagaccaaggggcct 685

                                                                       
Query: 223 ctctttccaatgatggccgacatgcatattctaattaaggggaaaaggcaccatgttgga 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 684 ctctttccaatgatggccgacatgcatattctaattaaggggaaaaggcaccatgttaga 625

                                                                       
Query: 283 tttttaaagtttataaggggaaatatcagaattaccaaatatcaagtatagaattttaaa 342
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||
Sbjct: 624 tttttaaagtttataagggaaaatatcagaattaccaaatatcaagtatagaatt--aaa 567

                                                                       
Query: 343 aaaa---tacatgtcttatttaacttaagtttatgaagcacaaaccacaccctcaataac 399
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaaaaaatacatgtcttatttaacttaagtttatgaagcacaaaccacaccctcaataac 507

                                                                       
Query: 400 tgctgctatactaaactggctatattaatcatatttggattctgctgtttgatttgagtc 459
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgctgctagactaaactggctatattaatcatatttggattctgctgtttgatttgagtc 447

              
Query: 460 taa 462
           |||
Sbjct: 446 taa 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 864
Length adjustment: 10
Effective length of query: 453
Effective length of database: 854
Effective search space:   386862
Effective search space used:   386862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)