BAC Information

Click to search

BAC

Clone NameMSMg01-365I07
ChromosomeX (Build37)
Map Location 120,080,986 - 120,081,388
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039544, Nap1l3
Downstream gene3110007F17Rik, LOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365I07.T7 (MSMg01no365_i07.b1)MSMg01-365I07.TJ (MSMg01no365_i07.g1)
ACCAG473454AG473455
length766729
length of high quality
(start - end)
405 (64 - 468)433 (56 - 488)
definitionCHROMAT_FILE: MSMg01no365_i07.b1 PHD_FILE: MSMg01no365_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:02 2005CHROMAT_FILE: MSMg01no365_i07.g1 PHD_FILE: MSMg01no365_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTTCTTACATTAGTCTTTGGAAATGTTAATCTTTGAATATCCAAAACAA
ATTAACCTATTTTATGAGTAGCAGTTTATCACTTATAAAATAAAGAAGAC
AGTGTTACATTAGCTTAAGCAAAAGAGAGAATTTTTAACATAACTGCATA
TTACTGTAATTGTCACACATTGGTAGTGTAAGACCCCCGAAGCTGGGCCT
CCGCTCAAATCCTGGAATGAGCTGGCCAGCACCCCAGTGTCCTGAGAGAA
AACCACCCCTGATGTTTATTGCAAGAGGTTTTATTATCAGCTAGCTGAGG
ACGAAGTCCCTTTGCAGTGCAGGGCAGGGGAGTTCGACCCGAGCAGAGAC
AGTAGGGGGCTTTTAACAGCTAGCTGAGGAATTGGGAGGAGCTGGGAGGA
GAGTTGGGAGGAGTTGTCTCCTCTTCCTCTCCTCCCTTCTCGCTCTTTCC
CTTCTTCCTCTTTTCCTCCCCCCTTCCGTTTCTTTTTCTTTTCCCCTTGC
CCCCCCCCTTTTTTCCTCCCTTTTCCCTTTTCCTCCCCCCTTTCGTGTTT
CCTTTCCTCCCCTTCCCCGCCCCTTTTTCTTTTTTCTCCTCTCGTTCCCT
CTTTTTTTCTCCCGCCCGTTTCTTTCTTTCCCTTTTTTTTCCCTTTTTCT
CCCGCTTTTTGTTTTTCCTTTTATCTTCCCGTCCTCCTTTTGTTTCCTAT
CTTTTTTTGTTCGCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACTATGTAGACCAGGCTGGCTTTGAACTAAGAAATCCACTACCTC
TGCCTCCCAAGTGCTAGGATTAAAGAAAGGGCCACCACTTACTGGCAATC
TTAAAACTCTTAAACTCCAAAAATGAAACCTTATAATTTAAAAAAAAAAA
AAAACTCAAAGAAAAACAAAATCAAAATAAATAAATAAATAAATAAATAA
AACTCTAACAAAAAATTTTTAAAAAATCCTTATAACACCCTAAAACCCTT
TAAAAAAAAAAACAAAATAAAGCATTAAAAACTCTAAAAATTCACTAAAA
TACTGAAAACCAAAAAAAACCCTTTAAAACACTCTTCAAAAAACCCTTAA
ATTAAAACACAATTAAATTCTTTAAAAAAAATGCACAAGGATCCAAAAAT
GACCCTAAAACTCTTTTTTTTTTTCTTTTTTTTGTTTTTTGATTTTTGTT
TTTTTTTGTTTGTTTTTGAGGTTGGGTTTCTCTGTGAATCCCTGGNTGTC
CTGGAGCTCCCTCTGTAGACTAGGCTGGCCTCGAACTCAAAAATCTACCT
ACATCTGTCTCCCAAGTGCTTGGATAAAAGGCATGGGCCAACACTGGCTG
GCAACCCTAAAAACCTTAAACCCCAACAAAAAAAATTTGAAAATTTTAAA
AAATACTTAACACCCCCCCACCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_i07.b1 MSMg01no365_i07.b1 CHROMAT_FILE:
MSMg01no365_i07.b1 PHD_FILE: MSMg01no365_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:02 2005
         (405 letters)



>mm_chrX_120080786_120081590
          Length = 805

 Score =  717 bits (371), Expect = 0.0
 Identities = 395/403 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctttggaaatgttaatctttgaatatccaaaacaaattaacctattttatgagtagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtctttggaaatgttaatctttgaatatccaaaacaaattaacctattttatgagtagca 260

                                                                       
Query: 61  gtttatcacttataaaataaagaagacagtgttacattagcttaagcaaaagagagaatt 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gtttatcacttataaaataaagaagacagtgttatattagcttaagcaaaagagagaatt 320

                                                                       
Query: 121 tttaacataactgcatattactgtaattgtcacacattggtagtgtaagacccccgaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaacataactgcatattactgtaattgtcacacattggtagtgtaagacccccgaagc 380

                                                                       
Query: 181 tgggcctccgctcaaatcctggaatgagctggccagcaccccagtgtcctgagagaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggcctccgctcaaatcctggaatgagctggccagcaccccagtgtcctgagagaaaac 440

                                                                       
Query: 241 cacccctgatgtttattgcaagaggttttattatcagctagctgaggacgaagtcccttt 300
           |||||||||||   | ||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 441 cacccctgatgcaaactgcaagaggttttattatcagttagctgaggacgaagtccctct 500

                                                                       
Query: 301 gcagtgcagggcaggggagttcgacccgagcagagacagtagggggcttttaacagctag 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 gcagtgcagggcaggggagttcgacccgagcagagacagtagggggtttttaacagctag 560

                                                      
Query: 361 ctgaggaattgggaggagctgggaggagagttgggaggagttg 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaggaattgggaggagctgggaggagagttgggaggagttg 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)