BAC Information

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BAC

Clone NameMSMg01-366F12
ChromosomeX (Build37)
Map Location 53,301,069 - 53,301,547
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187
Downstream geneLOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366F12.T7 (MSMg01no366_f12.b1)MSMg01-366F12.TJ (MSMg01no366_f12.g1)
ACCAG474080AG474081
length783764
length of high quality
(start - end)
244 (74 - 317)490 (79 - 568)
definitionCHROMAT_FILE: MSMg01no366_f12.b1 PHD_FILE: MSMg01no366_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:10 2005CHROMAT_FILE: MSMg01no366_f12.g1 PHD_FILE: MSMg01no366_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:10 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCG
CGGAATTCAGCAATTACACCAATGAATTTATTAAATTCGTAGGCAAATGG
ATGGATCTGGAGTATATATATCATCCAGAGTGAGGTAACCCAATCACAAA
AGAACACACGTGATATGCATTCACCAATAAGCAGATATTAGCCCATAAAT
TTAGACTATCTAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAAG
GAAGACCAACAAGTGGATACTTCGTTTCTTCTTAGAATGGGGAACAAAAT
ACTCATGGAAGGAGTTACTTGATACACAGTTTGGAGCTGAGATGGGAAAG
ACCATCCAGGGGCTTCTTCACTTGGGGAGCCATCCCATATACAACCACCA
ATCTCAGACACCATTGCATATGTCAGCAAGATTTTGTTGCCAGGACCCTG
ATATATCTATCTCTTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGT
GGATGCTCACAGTCATCTATTGGATGGGACACAGGGCCCCTAATGAAGAA
GCTAGAGAAAGTACCCAAGTAGCTAAAGGGGTCTGCAACCCTATAGGAGG
TCACCATATGAACTAACCAGTACCCCTTCCGAAATATGTATCTAGTCGCT
TACGTAGCACAAGAAGGGCCCAATCATGCCCTCCACGGGGAGGAAAAGCC
CCCCTGATTTTTTGAGGGGCTAATGCCCCCTTATTGTGGAAATGCCTGGG
CCCCCATAACAGGTCCCCCCCGTTTTTTTTTTT
NCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTCCAGTGTTGACATGACA
ACTCACAACTGTTTGTTACCCCAGTCCCAGGGGATCCAAAACCCTTACAC
AGATATGCATCTAAGCAAAACACCAATGCACATATAATAAAAATAAAGAA
ATCATTTTTAAGAATGAAATGTAGTGAGATGATGAACATGTAACTTAGAC
TATGACAGCTTACTATCACACATGAAGTTCTGAGTTCAAATACCCAACAC
AGTATATACTGGGGGTTGTGTTGAGGTGTGACTACAATTCCAGCACTCAC
TCCAGGGGTCAAAGAAGAGTCAGAAGTTTAAGGTCACCCTGGGATACATA
GAAAAGTTGAAGGTATCAAATCCTGTTTGAAATCATAAAATACTATAAAA
AAAAAAAAAGAAAGGAGAGAAGGAGTGAAAAAAGTATAGAAGAAAATCAT
ACATTACTTCTTAATTCTGGTTATATTATATATATTCTACATGTTCATCT
CACAGTTATATTCTTCTGGATTTGTCATTCAAAGCCTTAACAAATTATAA
TTCATTACTCTTCTTTAAAATGATTTTCATGTAAATTAAAGAGAAAACTT
TTTAATACGAAGAAACCACACAAAAAACTAAAAATAATGTATTTATGGCA
ATGCTGGCAAAAGGTGAATGTAAATTTCTCGCCGAAAACATGGGGGGCAT
AATACTTGTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_f12.g1 MSMg01no366_f12.g1 CHROMAT_FILE:
MSMg01no366_f12.g1 PHD_FILE: MSMg01no366_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:10 2005
         (490 letters)



>mm_chrX_53300869_53301758
          Length = 890

 Score =  748 bits (387), Expect = 0.0
 Identities = 460/491 (93%), Gaps = 14/491 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttccagtgttgacatgacaactcacaactgtttgttaccccagtcccaggggatcca 60
           |||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttctagggttgacatgacgactcacaactgtttgttaccccagtcccaggggatcca 260

                                                                       
Query: 61  aaacccttacacagatatgcatctaagcaaaacaccaatgcacatataataaaaataaag 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacccttacacagatgtgcatctaagcaaaacaccaatgcacatataataaaaataaag 320

                                                                       
Query: 121 aaatcatttttaagaatgaaatgt-agtgagatgatgaacatgtaacttagactatgaca 179
           ||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||
Sbjct: 321 aaatcatttttaagaatgaaa-gttagtgagatgatgagcatgtaacttagactatgaca 379

                                                                       
Query: 180 gcttac-tatcacacatgaagttctgagttcaaatacccaacacagtatatactgggggt 238
           |||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcttacctaacacacatgaatttctgagttcaaatacccaacacagtatatactgggggt 439

                                                                       
Query: 239 tgtgttgaggtgtgactacaattccagcactcactccaggggtcaaagaagagtcagaag 298
           |||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 440 tgtggtgagatgtgactacaattccagcactcaatccaggggtcaaagaagagtcagaag 499

                                                                       
Query: 299 tttaaggtcaccctgggatacatagaaaagttgaaggtatcaaatcctgtttgaaatcat 358
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 500 tttaaggtcaccctgggatacatagaaaagttgaaggcatcaaatcctgtttgaaatcat 559

                                                                       
Query: 359 aaaatactataaaaaaaaaaaaagaaaggagagaaggagtgaaaaaagtatagaagaaaa 418
           || ||| | |||||||           ||||| |||||||||||||||||||||||||||
Sbjct: 560 aatataatttaaaaaa-----------ggagaaaaggagtgaaaaaagtatagaagaaaa 608

                                                                       
Query: 419 tcatacattacttcttaattctggttatattatatatattctacatgttcatctcacagt 478
           ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 609 tcatacagtacttcttaattctggttatattgtatatattctacatgttcatctcacagt 668

                      
Query: 479 tatattcttct 489
           |||||||||||
Sbjct: 669 tatattcttct 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)