BAC Information

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BAC

Clone NameMSMg01-367O12
ChromosomeX (Build37)
Map Location 59,425,261 - 59,425,925
singlet/doubletsinglet
Overlap genenone
Upstream geneEG631990, LOC632000, LOC100039759, EG245440, LOC100039778, Ldoc1, LOC654353, EG627299, LOC666654, LOC385367
Downstream geneLOC671741, 4933402E13Rik, 4931400O07Rik, 1700019B21Rik, LOC671878, LOC666695, EG627420
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367O12.T7 (MSMg01no367_o12.b1)MSMg01-367O12.TJ (MSMg01no367_o12.g1)
ACCAG475261AG475262
length7391,361
length of high quality
(start - end)		669 (50 - 718)---
definitionCHROMAT_FILE: MSMg01no367_o12.b1 PHD_FILE: MSMg01no367_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:12 2005CHROMAT_FILE: MSMg01no367_o12.g1 PHD_FILE: MSMg01no367_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:12 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATTAATTACTACCTGTTCATAGCAGGCGATTATCGCTGCT
CTTTCTACTTGGAGTCAGTGACTAATATTGCCTATTTAGTTCTGAATGTG
AAAATTCTCATAATTAGTAAGCTCTCTGCCTAGAGCATCCATCTGTCTGT
TGTACTCTACCAGTACTACAGACATTTAGTCATACGTTCTATCTGTTTTG
CACTCTGCCAGGAGCTGCAGACATTTATTTATTTAATACCTGTCCATAGC
AGGTGATTATCACTGCTCTCTCTACTTGGAGTCAGTGACTAATATTCCCT
ATCTGGTTCTGAACCGCAGGTGAAATTTCCCATCTTTAGGTACTACACCT
ACTTATAAGAGGCAACTTGTCAAACCAGGATTTAAACCCAAGATTCCAGT
GGAGCCCACATTAGACAGAATATGAGTATCCCATAAGACTCATTAGAGCA
TTATATCTTTCTACCTTCATCACACATACTGCCAGCAGTCTGGTAAATGG
AAAAAGTTCCCTAGGCCCAAGTGCTTACCTATCCATGTTCTCACACACAT
GGCCTATTCTCACAGCTTGTGTGCTTAGTTTGTGTCACAGGCGTAAATCT
GCGTAGACAAACTCATTTTCTGTCACCATGATCTTACGCCACTGCTGCCA
GCTTTTTTGTTCTAGTCCTAGCAAAATATTTCTTTGCTA

TGTTTTGGGGGCNCGTTTTTGCGTTACTGTNGCCGCGAGCGCGCAGTGAG
CCAAAGCTACACACCCAATACCATCTATCCTTAACGCTATTACGCGCTGC
TCCGCGTGCCGCACGCGACGCTTCCGCCGCAACACCCAGGCGAACAGGAT
AATTGAATAGTAGATAACGCAGGGATGATGGACTTGAATCAGTCTGGTTC
GGACTGATGAGGTAGGCTGCCGGCGCAATGGTCCTAGTCTAAGTGGCCGC
GGGCCAGTGCGCGTAGAACCTGGCAAAGCATATATCTTAATGATGTCTCT
TATCAGCCTTGTCTTATTGTATGTCATGACGAACTACATTCAATATATCC
ACTCCAGTAGTTCCCATATAACCTTTTAGCGTGAGAGAGAGCAGCACTCG
CGTCCTCTCATATGTAGCACTATGTATAGAGTTAGGAACTACGCACCAAC
TCTCCAGTGCATCAGTAAGAGAGCGCGACTCTACACTCAAGCTCAGTCTC
TCTCTAATTCTCCCTACTAACACGTCACTGATGCGCGCCACTGATCCTCG
CTGACTGTGCCTGCGCGCGGCTATACGCATTTTTACCTACTACTTCTACA
CTTCATATTACCACTATACCTTGTCAATAAAGCGATAACAACGTGGTGAC
ATGATCGCCCGCCGTGAGCGGTAGTATAGAGGGGAGACCGAAGGGACACG
ATGACCGGAGCGGGGATCTCGCGCACACGAAGAGAGGACGGCGTAGAGCA
ACTTAGCACTATGAGGAACGANCGACGTTGCGCAGATAACAGGATCATAC
ACAAGAGGGACTCTACGAAGCTCTGAGCTACCGCGTGCCGAGAGAAAGAT
GACTCAAGCGTTGACGGCGCCAGGTAGACACCAGACGACGCACGTATCGG
CATCGAGAACGACGCTTGAGACGATTAGAAAGCAGAGAGTGAAGCGATAA
AATAAGTCGGACGACAGACCGCGCGCACCGGCCCGTGTGCTCTCGCTGCC
GGGCTCCGCCGTGCGACGCACAGCGGGCGGCTCTGACCGGTGCTGAGACT
CANTCCATCGTGATATAAGTGTTAGGAGATAGCGACACGAGGCGATACGG
CGATAGAGAGCATGCTTATTGAAGANGCAGGATAGCTGTACGTCTCACTT
CTACTATATTATATAATCTTACGCCATACGGCGCCACCGCTTCGCCACTA
CAACATAATTAATACACTATCCNTCTGTCTTATCACTATATTATTCGACC
CTAGCGTACTACGTGATTACTATNATATACTTTCATCAACTATATACAGA
CCACCTATCATGCTAACTACTATACTCATCACTCACACAATCACTCATGC
TCACTCCATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_o12.b1 MSMg01no367_o12.b1 CHROMAT_FILE:
MSMg01no367_o12.b1 PHD_FILE: MSMg01no367_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:12 2005
         (669 letters)



>mm_chrX_59425057_59426125
          Length = 1069

 Score = 1263 bits (653), Expect = 0.0
 Identities = 662/665 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctattaattactacctgttcatagcaggcgattatcgctgctctttctacttgga 64
           ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattctattaattaatacctgttcatagcaggcgattatcactgctctttctacttgga 264

                                                                       
Query: 65  gtcagtgactaatattgcctatttagttctgaatgtgaaaattctcataattagtaagct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcagtgactaatattgcctatttagttctgaatgtgaaaattctcataattagtaagct 324

                                                                       
Query: 125 ctctgcctagagcatccatctgtctgttgtactctaccagtactacagacatttagtcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctgcctagagcatccatctgtctgttgtactctaccagtactacagacatttagtcat 384

                                                                       
Query: 185 acgttctatctgttttgcactctgccaggagctgcagacatttatttatttaatacctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acgttctatctgttttgcactctgccaggagctgcagacatttatttatttaatacctgt 444

                                                                       
Query: 245 ccatagcaggtgattatcactgctctctctacttggagtcagtgactaatattccctatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccatagcaggtgattatcactgctctctctacttggagtcagtgactaatattccctatc 504

                                                                       
Query: 305 tggttctgaaccgcaggtgaaatttcccatctttaggtactacacctacttataagaggc 364
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggttctgaaccacaggtgaaatttcccatctttaggtactacacctacttataagaggc 564

                                                                       
Query: 365 aacttgtcaaaccaggatttaaacccaagattccagtggagcccacattagacagaatat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacttgtcaaaccaggatttaaacccaagattccagtggagcccacattagacagaatat 624

                                                                       
Query: 425 gagtatcccataagactcattagagcattatatctttctaccttcatcacacatactgcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagtatcccataagactcattagagcattatatctttctaccttcatcacacatactgcc 684

                                                                       
Query: 485 agcagtctggtaaatggaaaaagttccctaggcccaagtgcttacctatccatgttctca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agcagtctggtaaatggaaaaagttccctaggcccaagtgcttacctatccatgttctca 744

                                                                       
Query: 545 cacacatggcctattctcacagcttgtgtgcttagtttgtgtcacaggcgtaaatctgcg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cacacatggcctattctcacagcttgtgtgcttagtttgtgtcacaggcgtaaatctgcg 804

                                                                       
Query: 605 tagacaaactcattttctgtcaccatgatcttacgccactgctgccagcttttttgttct 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tagacaaactcattttctgtcaccatgatcttacgccactgctgccagcttttttgttct 864

                
Query: 665 agtcc 669
           |||||
Sbjct: 865 agtcc 869



 Score =  101 bits (52), Expect = 2e-25
 Identities = 88/100 (88%)
 Strand = Plus / Plus

                                                                       
Query: 348 acctacttataagaggcaacttgtcaaaccaggatttaaacccaagattccagtggagcc 407
           |||| ||||||||| | | ||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct: 19  acctgcttataagaagtagcttatcaagccaggatttaaacccaaaattcctgtggagcc 78

                                                   
Query: 408 cacattagacagaatatgagtatcccataagactcattag 447
           ||||||||||||||||||||||| |  ||||||| |||||
Sbjct: 79  cacattagacagaatatgagtattctgtaagacttattag 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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