BAC Information

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BAC

Clone NameMSMg01-368M22
ChromosomeX (Build37)
Map Location 71,611,225 - 71,611,671
singlet/doubletsinglet
Overlap genenone
Upstream geneGm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3
Downstream geneUbl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368M22.T7 (MSMg01no368_m22.b1)MSMg01-368M22.TJ (MSMg01no368_m22.g1)
ACCAG475945AG475946
length771765
length of high quality
(start - end)		506 (47 - 552)447 (70 - 516)
definitionCHROMAT_FILE: MSMg01no368_m22.b1 PHD_FILE: MSMg01no368_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:21 2005CHROMAT_FILE: MSMg01no368_m22.g1 PHD_FILE: MSMg01no368_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATAGCCACTCCGCCTCAAGATCTTCATACCAAGATCCAGGTCAG
AAACTTCTATCTCCCAGCCTCCAGATTAGGGTCACTGGTGAGCCTTCCAA
TTCTGGATTGTAGTTCATTCCAGATATAGCCAAATTGACAACCAGGAATA
GCCACTACACTTGCTTTTAAAGTAGTGTAAATCTTTTGAATCTGTCCGAA
GAAATTACTGCATGCTCTTTGCCAATGTTCATCTTGTGCCCATAACGAGG
CAATCTCGGCATTAGTAAAAGGTACCACAATTTCAAGTGGATTCATTCCA
ACTAATTGTCATGGTCTCATTTTTCCTTTTAGTATCAATTTAGAGACCTT
CTCTGTGTATGTTTTTAATTTCTTACTCTGTCTATATGCTAAAAAAATCC
ATTCTAAGATATAATCTTCCCTCTGCATGAGAATCCCTGTAGGGGAATAA
GTAGAAGGTAAGATAACTAAGATGCAGGCCATCTTTGGTTTAATCTGATC
TAGATGTGTATCTTGCAATTTCCTTTCTACCAGAGCTAAACTCCTTCTCA
GCTTCTGCTGAAAATTTCTTCCGGGTATTTAAATCCTTAATCACTTGTAA
GGTTTGAAAAAAATTGCTTAGCTCTTTAGTACCCAGCCATCCCAGGTGGA
AGGCGGTAAATTCTCCAGAAATTTTAAAAGCCCTAAATGGGTCCTCCCGA
ATGGAACTTTTTGGGCCACCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAGGGAGGCAGGAAAAAAGCTGGATGTTTG
GTGAAATTGTTCATCCACTGCCAGTACTCCTAGGCTTTTTCAGCTTTATA
AGCCAGTAAATTTACTGTGTTTTTAAACCAATTACTGGAAACCAAAAGCA
GTCTAGCTTATTAATAGAGTTCCTTTTGGTGAAATGACTCACATGCATCT
TTAGTGTTAATTTTACAAATACGTTCCCTGACTCAAAGTGAACAAGGTCA
CTGGTAAGCTTATTATCTGAGCTGGCACTCTATACACATGTTCACAAGCA
GGTCCCTGATATGATACCCCAGGTCTTAGGAGTACCAGGGTCTATCACCT
GCACACCCCCTCAAGCCTCTATCATTTCTGTACAAGGACTCAAGATTTGA
CCGACAAGGTCTATGCAGGAGGCCCTTGGGCAAGAAAGGCAAGTGTAGCC
CCAATAACATTCATAGTAGAGTGGCTTTCCTGGCAAAAGTAGAGGGACAG
TAGTGTCTTGCAGGTAGCTATCTTCCAGCTTGACTGCTCCCAGGGGGGCC
TCCTCAAAGGACTAGTCCTTACTTGACCTTTAGCACCCAGNCATAAGGAC
ATAAAAAAAAGAATCCCCGCCTTCGCAAAAATACTTTTTTCACACCCGGA
GTTCTTCTTATAAATGAAGGTGGGCAAGGAAAAACCCCGGTTACGGTGGG
GAAGAAAATCTCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_m22.g1 MSMg01no368_m22.g1 CHROMAT_FILE:
MSMg01no368_m22.g1 PHD_FILE: MSMg01no368_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:21 2005
         (447 letters)



>mm_chrX_71611025_71611871
          Length = 847

 Score =  857 bits (443), Expect = 0.0
 Identities = 446/447 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagggaggcaggaaaaaagctggatgtttggtgaaattgttcatccactgccagtactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagggaggcaggaaaaaagctggatgtttggtgaaattgttcatccactgccagtactc 260

                                                                       
Query: 61  ctaggctttttcagctttataagccagtaaatttactgtgtttttaaaccaattactgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaggctttttcagctttataagccagtaaatttactgtgtttttaaaccaattactgga 320

                                                                       
Query: 121 aaccaaaagcagtctagcttattaatagagttccttttggtgaaatgactcacatgcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaaaagcagtctagcttattaatagagttccttttggtgaaatgactcacatgcatc 380

                                                                       
Query: 181 tttagtgttaattttacaaatacgttccctgactcaaagtgaacaaggtcactggtaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttagtgttaattttacaaatacgttccctgactcaaagtgaacaaggtcactggtaagc 440

                                                                       
Query: 241 ttattatctgagctggcactctatacacatgttcacaagcaggtccctgatatgataccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattatctgagctggcactctatacacatgttcacaagcaggtccctgatatgataccc 500

                                                                       
Query: 301 caggtcttaggagtaccagggtctatcacctgcacaccccctcaagcctctatcatttct 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 caggtcttaggagtaccagggtctatcacctgcacaccccctcaggcctctatcatttct 560

                                                                       
Query: 361 gtacaaggactcaagatttgaccgacaaggtctatgcaggaggcccttgggcaagaaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtacaaggactcaagatttgaccgacaaggtctatgcaggaggcccttgggcaagaaagg 620

                                      
Query: 421 caagtgtagccccaataacattcatag 447
           |||||||||||||||||||||||||||
Sbjct: 621 caagtgtagccccaataacattcatag 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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