BAC Information

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BAC

Clone NameMSMg01-368O20
ChromosomeX (Build37)
Map Location 158,696,969 - 158,697,369
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC414364, Prkaca-ps1, Rai2, Gm47, Nhs
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368O20.T7 (MSMg01no368_o20.b1)MSMg01-368O20.TJ (MSMg01no368_o20.g1)
ACCAG476037AG476038
length729755
length of high quality
(start - end)		524 (71 - 594)345 (72 - 416)
definitionCHROMAT_FILE: MSMg01no368_o20.b1 PHD_FILE: MSMg01no368_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:30 2005CHROMAT_FILE: MSMg01no368_o20.g1 PHD_FILE: MSMg01no368_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCCATTTACTGTCCTTCGCCTTTTAAAACCATTTGTTGTGGGGAAG
TATTCTGTCTCATTTAAAATTTCTTTTTCTTGACTATACGATTGTTTGTA
GTATCACGTAACTAAATTAATTTTAAAAAATATTTCTTGCGCTTTGGGGA
CTGGAGAGATAATTCATCAGTTAAGACCATTTGTTGTTCTTACAAAGCCC
TGGATTCATTTTCCAGCAGCCACATGGCAGCTTACAACCATCTATAAGGA
TATCTAGTGCCCCCTATTGGTCTCCACAGGCATTGCATACATGTGGTGCA
CATACATGCAGGCAAAGCATTCATACACATAAACATAAGTATATTTTTAA
AAATATACTTGGATTCCCTTTTGTATAAATAAATTTTGATTGCAATATGA
AAATTTGGAATTTGCTGATAATAGGAAAGGAATGAAGCTAAAACCCGTGA
TAGCCACATCTGTAGAGATGGGATCAGGATTTATATTTTTCACATTCTAT
CCAGAGATTGTTCTCCTAATACTGCTTATATCCTTTACCCCACAGACATG
AACACATCAAACATCTTTCCTTACTTTTATTAGAATACTCTTTTTTTTTT
TCAGACAGGTTTCTCTGTATAGCCTTGGCTGGCTTGAAACTCACTTTGTA
GACCAGGTTGGCCTCCAACTCAAAATCCG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCAGAGACTCAAGACATTCCTCTGAAAA
TAAGGAAACTATTACTCGGGTGTCAGCGCTGTTGTGGGAAACATACATGT
AAAACTCAGAGCTATACATGAACATTGTAAGCATGCAATACATGTTGGCC
GACTTTTAATTATGGTATGAACTGAGTTTGTAAATGATGATTAAATGACC
ACAGATTTGTTCTCTGTATTCACATCCTTAGCTTCACTGCAGATCTACCA
TCAACGGTGGAGTCTATCCCTCCACTCCTTGAATCTGAGCTGGCCATGTG
GCCTATTGGGAATAAATAGCAAACATGACACATGCCAAGGTATGGAAAAT
GCTTGAAAACTGCACCTGCCTTGTGTTTCTGTTTTCGGGAACATGTCTGC
ATTGTGGGTGTTCCCAAGTTATTCTGTTAGAGCCTCACAAGCCATATGGA
AGAANATTAAGGCACATAATAAGCCAACAGTCCTAACCTGACAAAAATTT
ACCAACAGTTAGTACATGAACCAGGAGCAAGCCAAATTCTCTGCTGACCA
CAGATTCCTGAAGCCAGTTAAAAATTTTATAAACCAATGAACCAATCCCC
AGAAAAAGTTGCCCAGGTGAATACAGAAATATGATGCCAGCCCTCCGGTT
ATTGGTTTAACCCCCCGGAATTTGGGGGAAACTTCTGAACCTAACTGGCG
GGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_o20.b1 MSMg01no368_o20.b1 CHROMAT_FILE:
MSMg01no368_o20.b1 PHD_FILE: MSMg01no368_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:30 2005
         (524 letters)



>mm_chrX_158696446_158697369
          Length = 924

 Score =  760 bits (393), Expect = 0.0
 Identities = 399/401 (99%)
 Strand = Plus / Minus

                                                                       
Query: 124 ttggggactggagagataattcatcagttaagaccatttgttgttcttacaaagccctgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 ttggggactggagagataattcatcagttaagaccatttgttgttcttacaaagccctgg 865

                                                                       
Query: 184 attcattttccagcagccacatggcagcttacaaccatctataaggatatctagtgcccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 attcattttccagcagccacatggcagcttacaaccatctataaggatatctagtgcccc 805

                                                                       
Query: 244 ctattggtctccacaggcattgcatacatgtggtgcacatacatgcaggcaaagcattca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctattggtctccacaggcattgcatacatgtggtgcacatacatgcaggcaaagcattca 745

                                                                       
Query: 304 tacacataaacataagtatatttttaaaaatatacttggattcccttttgtataaataaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tacacataaacataagtatatttttaaaaatatacttggattcccttttgtataaataaa 685

                                                                       
Query: 364 ttttgattgcaatatgaaaatttggaatttgctgataataggaaaggaatgaagctaaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttttgattgcaatatgaaaatttggaatttgctgataataggaaaggaatgaagctaaaa 625

                                                                       
Query: 424 cccgtgatagccacatctgtagagatgggatcaggatttatatttttcacattctatcca 483
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cctgtgatagccacatctgtagagatgggatcaggatttatatttttcacattctatcca 565

                                                    
Query: 484 gagattgttctcctaatactgcttatatcctttaccccaca 524
           |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 564 gagattgttcccctaatactgcttatatcctttaccccaca 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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