Query= MSMg01no375_c15.b1 MSMg01no375_c15.b1 CHROMAT_FILE:
MSMg01no375_c15.b1 PHD_FILE: MSMg01no375_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:40 2005
(544 letters)
>mm_chrX_45655881_45656824
Length = 944
Score = 928 bits (480), Expect = 0.0
Identities = 526/544 (96%), Gaps = 5/544 (0%)
Strand = Plus / Minus
Query: 5 gaattcaagaccagtctactttacagagtgagttccagaacagccaaagctacacagaga 64
|||||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 874 gaattcaagaccagcctggtctacagagtgagttccagaacagccaaagctacacagaga 815
Query: 65 gactccgtctca-----aaaacaaaacaaaacaaaacaacaaaagaaacaaaacaaaaat 119
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 814 gactccgtctcaaaaacaaaacaaaacaaaacaaaacaacaaaagaaacaagacaaaaat 755
Query: 120 aaaaacagaaaagaaagtaggaaagatctcaaataaggccatagacaatccagaagaaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 aaaaacagaaaagaaagtaggaaagatctcaaataaggccatagacaatccagaagaaaa 695
Query: 180 taggtgaccatgtttctgatcttggaagtaggggcaggtgttttaggcgtacaagtaatt 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 taggtgaccatgcttctgatcttggaagtaggggcaggtgttttaggcgtacaagtaatt 635
Query: 240 gaagggacaatgatggacgacatagatttagctctataaaaacgtaaaaactgctctctt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 634 gaagggacaatgatggacgacatagatttagctctataaaaacgtaaaaactgttctctt 575
Query: 300 tctctcgaaccaggtggcctcagccatgaacaatgcagcaatggccaagatttggctcgg 359
||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct: 574 tctctcgaaccgggtggcctcagccatgaacaatgcagcaacggccaagattaagcttgg 515
Query: 360 gaccttcgcagcaagaagaaggaggagctgttgaaacaagtggatgatctgaaggtggaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaccttcgcagcaagaagaaggaggagctgttgaaacaagtggatgatctgaaggtggaa 455
Query: 420 ctgtcccagctttgtgcccccaaagtgacaggcgccgcgttcaagctctctaagatacga 479
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctgtcccagctttgtgtccccaaagtgacaggcgccgcgttcaagctctctaagatacga 395
Query: 480 gatgtacacacatccatctcctgagtcctcatggtctctaaccagactggaaaagaaaac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gatgtacacacatccatctcctgagtcctcatggtctctaaccagactggaaaagaaaac 335
Query: 540 ctca 543
||||
Sbjct: 334 ctca 331
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_c15.g1 MSMg01no375_c15.g1 CHROMAT_FILE:
MSMg01no375_c15.g1 PHD_FILE: MSMg01no375_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:40 2005
(488 letters)
>mm_chrX_45467848_45468735
Length = 888
Score = 928 bits (480), Expect = 0.0
Identities = 486/488 (99%)
Strand = Plus / Plus
Query: 1 taagctccttcctggtccagcttgtttcagactctgttggttggagcagtataatgatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagctccttcctggtccagcttgtttcagactctgttggttggagcagtataatgatcc 260
Query: 61 agggtgctagactctatagacatgggcagtagacggaggggagaaagcagacagaaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggtgctagactctatagacatgggcagtagacggaggggagaaagcagacagaaaaca 320
Query: 121 aggtgatggtctctatatgaaccatttccccaaaatagcagccctgcctactcagcccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtgatggtctctatatgaaccatttccccaaaatagcagccctgcctactcagcccac 380
Query: 181 tttttcctaccagtagctctgcctctacctcatgcagcatctcataccagcccagctaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttcctaccagtagctctgcctctacctcatgcagcatctcataccagcccagctaga 440
Query: 241 agaaaaaggcattttcaaaggcagtgtatctgcttcagttaatttctgacctgccgggga 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 agaaaaaggcattttcaaagtcagtgtatctgcttcagttaatttctgacctgccaggga 500
Query: 301 tacataagaattttcactaaagattcaagctcctttcagcaaaaataacagtgacttgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacataagaattttcactaaagattcaagctcctttcagcaaaaataacagtgacttgtc 560
Query: 361 ttcagggatgatgagaactaacataaagtcatcttgtatcaacagtccaaaagacggatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcagggatgatgagaactaacataaagtcatcttgtatcaacagtccaaaagacggatg 620
Query: 421 ttacaacgcccgcatacaaaatgacatagtgtttgcatataatctatacagagctttcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttacaacgcccgcatacaaaatgacatagtgtttgcatataatctatacagagctttcta 680
Query: 481 tatgcttt 488
||||||||
Sbjct: 681 tatgcttt 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
