NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGAAGATAGAACTTATGGCATAGCATTGAGGCAATGACACAA
GGAAATAATTAGATATTAGAAAATGCCCCTGTGTTTCTGAATGATGCAAG
CCTTTATTGCTGTGTAGCCAAAGGGAAACCGAAATCCTTCAGAAAAATCA
AAGAGAGGAGCCAAATAAACACCTTCCATCCAACAAGATCAAAAACTGCT
CTTCGAAAACTGGCAAGGTATGCAACAGGCAAACGAAGTTTCTGTGTCAG
TAAAGAAGGATCTTCACTTATAGCCTCAATTTTACACTTTCTTAGTGTAT
CAATTTCTATAAAACATGACCTCTCAAAGAATCAGTTTAACTAAGGGTTT
AATAAATCATTCTGTGCAACTATATACCGGCTGCATCATTGGACTGAAAG
TGAATGGTCCATGTGTTGCCACTGATGTGAGCCATTTGCCTGTTGTCCTT
CAGGAGAATTATATGACCTTCAACAAGCAATCCAAATATGNAAAAGTAAT
ANGAACCCCACTCACTAACTGTGACAGACAAAGCAATTGGTTTAAGNCAC
AAGTGCTATTTTTCAGGAGTCCACTTTGTCTGTGGTCTGAATCTAATCAA
ACCCGATATTAGTATTTTGAATAAAACTTTTCTTTGTACTATAAGAGAAT
AAAAAGATTTGCCCTATTCTCTGAACATAGCAAATTATTTGCC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCGCACCTTCGTACAAGGCTTCT
TTACTAGTTAGCCATAGCGGAGGCCCGCACCATCTTATAATGGCGATTGC
TCGCGGCACACACGGCTCTCCTCAGAGATTACTGGTGGCATGCACGAGAT
TGCTCGCAGTACGTACCTGCTCTCCACATCTTCCCGTTTTTATTTTATTA
AATAAAATCTCTCTTTTTTCAAAACATAGATAAGATGGAGGGTGTATCCA
CCAGAACAGGGATCCAACGTGGGATCCGTGCCACCATGGCACGGGTGTTC
TTTGTTACATCCCAACATTGAGAAATCCAACAATTATCATTGGAACAGAT
TTCAAATGAATCATTTGAAAGAATAAACAAGAAAGCGGGGTAAACACAGA
CTGTGGTAGATGGATAATTAATCTGGTTTACCAAAGTTTTATTAAACCCA
GTGATCTCTGCACTGGTATTACTATATCCATAAGAGTCCAGGGAGGCATC
ATGTATTCCCCAATACTGAGCAAATCTTGAGATGCCAGTAAAAGAAGCCT
TTCCAACTGCTCCTCCCTGGATAAAGATCAAAGGATTGAGNTCTGTACAA
CTGCCATTGACTCCACAAAGCACCCACTTGTGAAGGGGAGCTTTCTAATA
TCCTGGATGAAAGGCCCCTTTTCCTAAAAAATTCCTTCTCTGGG

Query= MSMg01no376_l16.b1 MSMg01no376_l16.b1 CHROMAT_FILE:
MSMg01no376_l16.b1 PHD_FILE: MSMg01no376_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:41 2005
         (489 letters)



>mm_chrX_143691826_143692715
          Length = 890

 Score =  310 bits (160), Expect = 2e-88
 Identities = 328/400 (82%), Gaps = 42/400 (10%)
 Strand = Plus / Plus

                                                                       
Query: 96  tgatgcaagcctttattgctgtgtagccaaagggaaaccgaaatccttcagaaaaatcaa 155
           ||||||||| ||| || |||||||||||| |||||||| ||||||||||| | |||||| 
Sbjct: 321 tgatgcaaggcttcatggctgtgtagccagagggaaacagaaatccttcacagaaatcag 380

                                                                       
Query: 156 agagaggagccaaataaacaccttccatccaacaagatc-aaaaactgctcttcgaaaac 214
           |||||| | ||||| |||| |||| |||||| ||||||| ||||||| |||   ||||||
Sbjct: 381 agagagcacccaaacaaacccctttcatccagcaagatcaaaaaact-ctcaaagaaaac 439

                                                                       
Query: 215 tggcaaggtatgcaacaggcaaacgaagtttctgtgtcagtaaagaaggatcttcactta 274
           ||||||||| ||||||| |||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 440 tggcaaggtgtgcaacacgcaaaccaagtttctctgtcagtaaagtaggatcttcactta 499

                                                                       
Query: 275 tagcctcaattttacactttcttag-tgtatcaatttctataaaacatgacctctcaaag 333
           ||||  |||||             | ||        ||   |||||||||| | ||||||
Sbjct: 500 tagc--caatt-------------gctg--------tc---aaaacatgacatttcaaag 533

                                                                       
Query: 334 aatc-agtt-taactaagggttt-aataaatcattctgtgcaactatataccggctgcat 390
           |||| | || |  |||||||||| || |||||||| ||||||||||||| || |||||||
Sbjct: 534 aatcaacttgt--ctaagggtttcaa-aaatcattttgtgcaactatattccagctgcat 590

                                                                       
Query: 391 cattggactgaaagtgaatggtccatgtgttgccactgatgtgagccat-tt-gcctgtt 448
           ||||||||||||||||||||| ||||||||||||||||||||||||  | || |||||||
Sbjct: 591 cattggactgaaagtgaatggcccatgtgttgccactgatgtgagc--tgttagcctgtt 648

                                                   
Query: 449 gtc-cttcaggagaattatatgaccttc-aacaagcaatc 486
           ||  |||||||||||||||||||||||| || ||||||||
Sbjct: 649 gtggcttcaggagaattatatgaccttccaa-aagcaatc 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 890
Length adjustment: 10
Effective length of query: 479
Effective length of database: 880
Effective search space:   421520
Effective search space used:   421520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)