BAC Information

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BAC

Clone NameMSMg01-377B15
ChromosomeX (Build37)
Map Location 128,846,042 - 128,846,561
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670449, LOC245600, EG631264
Downstream geneLOC665846, LOC665850, LOC665854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377B15.T7 (MSMg01no377_b15.b1)MSMg01-377B15.TJ (MSMg01no377_b15.g1)
ACCAG482262AG482263
length761749
length of high quality
(start - end)		65 (50 - 114)526 (80 - 605)
definitionCHROMAT_FILE: MSMg01no377_b15.b1 PHD_FILE: MSMg01no377_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:10 2005CHROMAT_FILE: MSMg01no377_b15.g1 PHD_FILE: MSMg01no377_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTAATTTTNNNCNTTNNTNNNCTCTTTTTCCCCANANATCCNCNNAAT
TCATTCCTTCCTTTGTTTCTGTTTATCCCNAACCTATACATCTTTATTTT
ATANAATATCACCTCANTAATCACGNGATAATTAACACCACCCCACACAA
TTACCTGAGAGGAGTCCGACCCCCGCCGCTGNNNNTNNNTTTTNNNNNTT
ANTAATCTTAAAACTGACCTAAGCCCCCCTTNNNTTCCCTTTCTTCTTTA
AATGAAATGCAACCCAAAACAACCAATTCGTCGTAGACNNNNNTTNTTTT
TTTNTTTTNATTTTTNNCCNAAAAATTTTTCAAAAATTTTNTTTTTAAAT
TTTTTTTTTTTTTTTTTTTTTTTNTTNNTTTTTTTTTTCNTTTTNTTTTT
CCNNNTTTTTCTTTTTTTTNNNNNNNTTTTTNTTTTTTTNTTTTTTTTTT
TTTTNTTTTTTNNTTAAAATTTTNTTTTTTTTTTTTTTTTTTTTTNNTTT
TTTTTTTTTTTTTNTTTTTNTTTTTTTTTTTNTTTNTTTTTTTTTTTTTN
TTTTTTTTTTTTTTTTTTTTTNCNNNTTTTTCCTTTTCCTTCCTTCCCTT
TTTTTTTTTTNNTTNNNTTTTTTNTTNNTTTTTNTTTTTTCNTTTTTTTT
TTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTNTTTTTTTTTTTTTTTTT
NTTNTTTTTTTTTNTTTTTTCCTTCCCCTTCCTTTTTTTCCTCAAATACC
CCTCCCCACAA

TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGTAGCATCTGCATTTAC
TTCTAAAGCATGACCTAATTAAGCAGGGGTGAGACTTCATACCATAGGTG
AGCCAAAAGAACTGTGTTTGTTCTGAAAACCCTTATATAAATGACTGATC
ACAGACACTCTATTGTATAAAATGAAAATGTAAGAATGGGATGAAGCCCA
GCTTAATTATGGAGTAAACATGTTCTTACTGTGAAAATAGCTACTGATAG
ATAAATGAATAACATGAATGATTTAATTATGGTACCCAAGTTTTGTTTTA
TTTCCCTTAAGTTAAATAAGGAGAATAGAAGAGTAAAGATTACATTTGTG
TCATCTGTTAGTTTTCTAGAACAGATAGGACTCTGCTTTTATTTGACCTT
ATATTGGTTTATGTTTTCAACTAGAAACTCAAAACCTCTCCTCCTTCTGC
TCCTCACTGCCACAGAAAATACTTTCTAGTCTTGCATTCTCAACAAAGTT
TTCTTTCAAAGGAAAAAAAAAGAAGCCTGTATGAACACAAAAGGTGATGG
AGGATTGGCTGGGCTTCTTTTCTGTGTTGGTAAAAAAATCCAATATTTCT
GCATAATAATTGCGGAAATTTACTCTGTAGGTAATCGATTTCTCAGTTTC
TGCCCCCTAATGCCCACATCCGACACATAAATGTATTTGTTTCTTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_b15.g1 MSMg01no377_b15.g1 CHROMAT_FILE:
MSMg01no377_b15.g1 PHD_FILE: MSMg01no377_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:10 2005
         (526 letters)



>mm_chrX_128845842_128846761
          Length = 920

 Score =  971 bits (502), Expect = 0.0
 Identities = 518/526 (98%), Gaps = 6/526 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgtagcatctgcatttacttctaaagcatgacctaattaagcaggggtgagacttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tcttgtagcatctgcatttacttctaaagcatgacctaattaagcaggggtgagacttca 661

                                                                       
Query: 61  taccataggtgagccaaaagaactgtgtttgttctgaaaacccttatataaatgactgat 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 660 taccataggtgagccaaaagaactctgtttgttctgaaaacccttatataaatgactgat 601

                                                                       
Query: 121 cacagacactctattgtataaaatgaaaatgtaagaatgggatgaagcccagcttaatta 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 600 cacagacactctattgtataaaatgaaaatgtaataatgggatgaagcccagcttaatta 541

                                                                       
Query: 181 tggagtaaacatgttcttactgtgaaaatagctactgatagataaatgaataacatgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tggagtaaacatgttcttactgtgaaaatagctactgatagataaatgaataacatgaat 481

                                                                       
Query: 241 gatttaattatggtacccaagttttgttttatttcccttaagttaaataaggagaataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gatttaattatggtacccaagttttgttttatttcccttaagttaaataaggagaataga 421

                                                                       
Query: 301 agagtaaagattacatttgtgtcatctgttagttttctagaacagataggactctgcttt 360
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 -----aaagattacatttgtgtcatctgttagttttctagaacagataggactctgcttt 366

                                                                       
Query: 361 tatttgaccttatattggtttatgttttcaactagaaactcaaaacctctcctccttctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tatttgaccttatattggtttatgttttcaactagaaactcaaaacctctcctccttctg 306

                                                                       
Query: 421 ctcctcactgccacagaaaatactttctagtcttgcattctcaacaaagttttctttcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctcctcactgccacagaaaatactttctagtcttgcattctcaacaaagttttctttcaa 246

                                                         
Query: 481 aggaaaaaaaaagaagcctgtatgaacacaaaaggtgatggaggat 526
           ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agg-aaaaaaaagaagcctgtatgaacacaaaaggtgatggaggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 920
Length adjustment: 10
Effective length of query: 516
Effective length of database: 910
Effective search space:   469560
Effective search space used:   469560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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