BAC Information

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BAC

Clone NameMSMg01-378J14
ChromosomeX (Build37)
Map Location 69,151,427 - 69,338,566
singlet/doubletdoublet
Overlap geneGm1141, Prrg3, Fate1, Cnga2
Upstream genePpia-psx_466.1, EG628080, G630014P10Rik, LOC667013, Mtm1, Mtmr1, Cd99l2, LOC667017, Hmgb3, LOC100040549, Gpr50, LOC654357, 2610030H06Rik
Downstream geneMagea4, Gabre, Magea10, Gabra3, Gabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378J14.T7 (MSMg01no378_j14.b1)MSMg01-378J14.TJ (MSMg01no378_j14.g1)
ACCAG483408AG483409
length803792
length of high quality
(start - end)		511 (51 - 561)249 (75 - 323)
definitionCHROMAT_FILE: MSMg01no378_j14.b1 PHD_FILE: MSMg01no378_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:07 2005CHROMAT_FILE: MSMg01no378_j14.g1 PHD_FILE: MSMg01no378_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,151,427 - 69,151,933)(69,338,318 - 69,338,566)
sequence
NNNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGATAACTACAGCCTACAGTATCACACCTGTCTGTTCCT
GGAAATGAGATCTCACTCCTGGTCTTTGGATTCCTCCCATCCCCCAAATA
CTAGGACTATGAACCTAAAAGTTACAAATGTAAGCTATTCATCTTAAGTT
TCTAAACTTTAACTTTTGTCATAGTCTACACTTGTTGCAGCAGATTTTCA
TGTGATCGTGATCACCTGTGTACTGCCAACTGCTGAGCTCTAGACTGACT
GAAAGCTGATGTAAACCTGTTCAGTCGAGGTGATTACTTCCTGTCTTAAG
CTGGCTCAGTTAACCAGATGCTTCTGATAAATTACCCATTGCCCAGTCTT
TGACTAGTCTTTCAGCCTTCCTGGGCCCTGACAATGATGCCATACTTTTA
GCTTTAAGTAGATACAGAAGATAGCATTTTATTTCTTGCCCCACTAACAG
GATGAAGGGCTAAGTCACAAGGAAATTCCCTGACATAGGGGACAAAACTG
CTACCTATGATTGCAACTGGCATACCACGAAACTGGGCCCAGATTCATCA
ACTGGTGGAGTAATTAATTTAAGAAATTCTACAGAATGGGGGGGAAACTT
GGCCTGGTTTATTTATAACAAAGAGGAATTATATTGGTTTTTAAAAAAAA
TTGTTATTTTTTTAACCAACATTTTGTGAATGGGAATTGGGAAACAGAAA
TAAAATTCCTGGCGAGCGCCCTGTCCTCCAAGGACCTAAATCTGGTGAAG
GGG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATAAATCAAAACTGAGAAAGTTTGG
AGGAAGAAAAAAGATGCTTACTTTTTCTTCTCCTAGGTAGAAGAAAGGTA
TTTCACCCCACTAAACATGTACACAGAAGCTGTTTCAAATCAGGAATTGG
GCAAGCACTGTTGTAGAGACAGGGTTGAGTCCAGCTTTGGTCATTGATTG
TCAACATCTCCCTAGATCACTAAAGATACAGGACAAGCAATGCAGAATGT
AAGTAATATGGCAGAGGAATACTATTTTTAAAGGGTTTTTCTGACAGGAA
CGCTGTTCTCCAGCTAGCGTCTCAGAAGGGGTATACTTCACTCTTTGGCC
TTTAAGGTATAAGAAGTATGTGGGAGGGATTTGGAGGAAGAGGNTCTTNT
ANTANNTTTTTTTATTTNNGTTTTTTNNTTNTTTTTNGNTTTTNTTTTTA
TTTTTTTTTTTTTTTTTTTTTTNTTGNNTTTATTTAAGTATGTTATATTT
TTTTATTTTTGTTAAAAATTTATTAGAATATTATTGTTTTTATTTTATAG
TATATATATTGTGGATTTTTGATTTGATTAAAGTAATATAATTTCTTAAT
ACCCACTTTCTTTTTTTATTTCGCCATCTTTATCCACTTTATCCCCCCCC
TTTCATCTATGTTTCTCCTCCCCGCTTTTCCTTTTATCGCCCTCCCCCCC
CCCCTCCCCATTATTTTTCCCTTCCCCCCGCTCCCTCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_j14.b1 MSMg01no378_j14.b1 CHROMAT_FILE:
MSMg01no378_j14.b1 PHD_FILE: MSMg01no378_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:07 2005
         (511 letters)



>mm_chrX_69151223_69152133
          Length = 911

 Score =  942 bits (487), Expect = 0.0
 Identities = 502/507 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagataactacagcctacagtatcacacctgtctgttcctggaaatgagatctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagataactacagcctacagtatcacacctgtctgttcctggaaatgagatctc 264

                                                                       
Query: 65  actcctggtctttggattcctcccatcccccaaatactaggactatgaacctaaaagtta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actcctggtctttggattcctcccatcccccaaatactaggactatgaacctaaaagtta 324

                                                                       
Query: 125 caaatgtaagctattcatcttaagtttctaaactttaacttttgtcatagtctacacttg 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 caaatgtaagctattcatcttaagtttctaaactttaacttttgttatagtctacacttg 384

                                                                       
Query: 185 ttgcagcagattttcatgtgatcgtgatcacctgtgtactgccaactgctgagctctaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgcagcagattttcatgtgatcgtgatcacctgtgtactgccaactgctgagctctaga 444

                                                                       
Query: 245 ctgactgaaagctgatgtaaacctgttcagtcgaggtgattacttcctgtcttaagctgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgactgaaagctgatgtaaacctgttcagtcgaggtgattacttcctgtcttaagctgg 504

                                                                       
Query: 305 ctcagttaaccagatgcttctgataaattacccattgcccagtctttgactagtctttca 364
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcagctaaccagatgcttctgataaattacccattgcccagtctttgactagtctttca 564

                                                                       
Query: 365 gccttcctgggccctgacaatgatgccatacttttagctttaagtagatacagaagatag 424
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 565 gccttcctgggccctgacaatgatggcatacttttagctttaagtagatacagaagatag 624

                                                                       
Query: 425 cattttatttcttgccccactaacaggatgaagggctaagtcacaaggaaattccctgac 484
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 625 cattttatttcttgccccactaacaggatgaagggctaagtcaaaaggaaattccctgat 684

                                      
Query: 485 ataggggacaaaactgctacctatgat 511
           |||||||||||||||||||||||||||
Sbjct: 685 ataggggacaaaactgctacctatgat 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_j14.g1 MSMg01no378_j14.g1 CHROMAT_FILE:
MSMg01no378_j14.g1 PHD_FILE: MSMg01no378_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:07 2005
         (249 letters)



>mm_chrX_69338118_69338766
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataaatcaaaactgagaaagtttggaggaagaaaaaagatgcttactttttcttctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cataaatcaaaactgagaaagtttggaggaagaaaaaagatgcttactttttcttctcct 390

                                                                       
Query: 61  aggtagaagaaaggtatttcaccccactaaacatgtacacagaagctgtttcaaatcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aggtagaagaaaggtatttcaccccactaaacatgtacacagaagctgtttcaaatcagg 330

                                                                       
Query: 121 aattgggcaagcactgttgtagagacagggttgagtccagctttggtcattgattgtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aattgggcaagcactgttgtagagacagggttgagtccagctttggtcattgattgtcaa 270

                                                                       
Query: 181 catctccctagatcactaaagatacaggacaagcaatgcagaatgtaagtaatatggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 catctccctagatcactaaagatacaggacaagcaatgcagaatgtaagtaatatggcag 210

                    
Query: 241 aggaatact 249
           |||||||||
Sbjct: 209 aggaatact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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