XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCCACTTTGGCTTCAACAAACAGATCCATCTGCTTCAGATCCTTCAGAAT
CTATGCATTCTTCCAAAGGACCCATGGTAATTTCTTTATCTGGACGAGGA
ACACTAGGATCTGTATCATCTGCCCTAGAGCCTTTGACAATGTCCCTATC
TGCTCAAGTGAATCCGGGACCTTTGTTATCTGCTGGAGGCCCTTGCCTGT
CTTTACAGGGGAATCTGGAAGGTGGTACCTGTACACATGGCAAGCCAGGA
ATGTCCCATGCTTCACCAGGACCTTTGGAAATTTCAGCCTCTACCATAGT
GAGTCTAGGACCTTCTCCATCTGTCCAATTGGATTTGAAAGTGTCACATT
CTGTCTTAATGTCTCAGAGACCTTCCCTGTCTGCCCAAGGTGTACTAGAA
ACATCAATATCTTCCCAAGGGCTTACAGAAACTTCCTTGTTACCTCAAGA
GCCTCCAGGACACTGGTTGTTAAAAGGAGGCTTTAGGATATTTACCATCC
TATCCAGAAGATCTTGGACTTTCTGATTCTTCCCATTACACACTACAAAC
ACGGGTAGGTATGCAAAATAGTGCACAAATACCACCTGTTTTCCCAAGAA
GTCATATAATTTTTGTCAGCTTCACATGATTCTCCCACTTTTTCAGCTCC
TTCATCACTCAATCCAGAGTCATATCAACCTCCTTTTTG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTACAAGATTACAAAAGAGGTCGAATATA
AATGACATAGTCTTTAGTTGAATTGACCTTTTATAAATAGAAATTTGACA
AAAAATAATATTTACTCTATGAGTGCTTTCAAAAATAGAATGGTTTGCAT
GGAACAAGTTAGTATTGGAAGGATTAGAAGTTCGAAGCTATCCTTGGTTA
CATTCTAAGTTGGGGCCAGCCTAGGCTATATGACATCCTGTCTGAAAATA
TGAAATTACTGGAACCAGTAGTTTATCTTTATGAATCCTCTACTTTGGAT
ACTGAATCATGAGCAATATCAGAAGTACAAGGTCTATCAGTACCAGAAAG
TATAAAAAGAATTTCCCCAAACAAAAATAATTTAAGAGTTATTTTTAGGG
GCATGATTATGTTGCCAGGGAATAAAAGCACTTTGAGTTTAGAGTGGTCA
GTAATGAGGAGTGAGTATTGCTCTTACACAGGACTCACATTGGGTAGTTC
ACAGTCACCTTTACCTTGAGGTTCAGGAGTCCTCTGGCCATTGTGGCCCT
GCGTATTCCCTCACATATATATGCACGCACGACCACATTATCTTTTACCC
CCTTCTTTCCTTCCCCCCCTCTTTTTTACCTTTCCCCCCCCTTTTCACCC
CTTTCCCCTTCCCCCCACACCCCCCTTTTTTCCCTTTTTTTCCTCCCTAT
G

Query= MSMg01no379_k02.b1 MSMg01no379_k02.b1 CHROMAT_FILE:
MSMg01no379_k02.b1 PHD_FILE: MSMg01no379_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:26 2005
         (459 letters)



>mm_chrX_121311273_121312131
          Length = 859

 Score =  723 bits (374), Expect = 0.0
 Identities = 433/458 (94%), Gaps = 10/458 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaacaaacagatccatctgcttcagatccttcagaatctatgcattcttccaaaggacc 60
           |||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||
Sbjct: 684 tcaacaaacagatccatctgcttcagatccttcagggtctattcattcttccaaaggacc 625

                                                                       
Query: 61  catggtaatttctttatctggacgaggaacactaggatctgtatcatctgccctagagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 catggtaatttctttatctggacgaggaacactaggatctgtatcatctgccctagagcc 565

                                                                       
Query: 121 tttgacaatgtccctatctgctcaagtgaatccgggacctttgttatct---------gc 171
           |||||||||| |||||||||||||||||||| | |||| ||||||||||         ||
Sbjct: 564 tttgacaatgaccctatctgctcaagtgaattcaggacatttgttatctgttcaagaagc 505

                                                                       
Query: 172 tggaggcccttgcctgtctttacaggggaatctggaaggtggtacctgtacacatggcaa 231
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 504 tggaggcccttgcctgtctttacaggggaatctggaagcttgtacctgtacacatggcaa 445

                                                                       
Query: 232 gccaggaatgtcccatgcttcaccaggacctttggaaatttcagcctctaccatagtgag 291
           ||| ||||| ||| |||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 444 gcccggaatatccaatgcttcaccaggagctttggaaatttcagcatctaccatagtgag 385

                                                                       
Query: 292 tctaggaccttctccatctgtccaattggatttgaaagtgtcacattctgtcttaatgtc 351
           ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 tctaggaacttctccatctgtccaattggatttgaaagtgtcacattctgtc-taatgtc 326

                                                                       
Query: 352 tcagagaccttccctgtctgcccaaggtgtactagaaacatcaatatcttcccaagggct 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagagaccttccctgtctgcccaaggtgtactagaaacatcaatatcttcccaagggct 266

                                                 
Query: 412 tacagaaacttccttgttacctcaagagcctccaggac 449
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacagaaacttccttgttacctcaagagcctccaggac 228


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)