BAC Information

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BAC

Clone NameMSMg01-381I08
ChromosomeX (Build37)
Map Location 94,344,935 - 94,345,433
singlet/doubletsinglet
Overlap genenone
Upstream geneMsn, LOC668221, Vsig4, B230358A15Rik, Heph, Gpr165, LOC675824, LOC668234, EG668236, LOC668238, Pgr15l
Downstream geneEda2r, LOC668244, Ar
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381I08.T7 (MSMg01no381_i08.b1)MSMg01-381I08.TJ (MSMg01no381_i08.g1)
ACCAG485642AG485643
length717760
length of high quality
(start - end)
454 (37 - 490)499 (70 - 568)
definitionCHROMAT_FILE: MSMg01no381_i08.b1 PHD_FILE: MSMg01no381_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:57 2005CHROMAT_FILE: MSMg01no381_i08.g1 PHD_FILE: MSMg01no381_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGTCGCTATACGACTCCTATTTCGAGAGATCCGCGGAATTCCTGA
TCTTCCAAGACTTTTATCATGAATGGATGTTGGATTTTGTCAAATGCTGT
CTCAGTATCTAACAAGATAGTCATGTGGTTTTTTTCTTTGAGTTTGTTTA
TATAGTTTATTATGTTGATGGATTTCTGTATATTAATCCATCCTTGCATC
CCTGGAATGAAGCCTATTGATCATGATGAATGATCGTTTCAATGTGATAT
TGGATTCAGATAGGGAGAATTTTATTGAGTATTTTTGCATCAATATTCAT
AAGGGAAATTGTTCTGAATTTCTCTTTCTTTGTTGGGTCTTTATGTAGAT
TATGTATCAGAGTAATCGTGGCTTCATAGAATGAATTGGGTATAGTACCT
TCTGCTTCTATTTTGTGGAATAGTTTTAGGAGAACTGGAATTAAGTCTTC
TTTGAAGGTCTGATAGAACTTTGCATTAAATCCATCTGGAATATATATAT
ATATATATGCATGGTCCCGGGCTTCTTTTTCCTTACGAGATTACCTTCTT
ATATCTATTAAATATTTCCCTTATATACTCCTCCTTTTTTCCCCATCAAT
TTCCGTAAACCCCCCCCTTGACCCTCTTCCCTATCCACCCTTTTCCCTTT
TCTTTGCCCCTCTTTTTTTTCTTCAACCGGGCACATCAAATATTTTCTTA
GAACTCCCGTTCTTCTT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACCATAGAGCTGCCCCAATAAATCTGCTTTT
ATATTTTAATTTGGCTTGAATTGGCTCATTTTGTCAGTGGAGAAAACCCA
TCGATAATTTTTGGCATGTAGTGTCTATGAGGTGCTATCTCCCTATTGAT
ATATTTCTATATCATATGTGTGACATATCAAAGGAAATGTTCACTTATAT
ATTAGGCCACTTTTAAAATTCCATTTGCTTTTCACTTTAACACTAATCAA
AATGGACCTCCATAATCATTTTATGTCCAGTCTATTTAGAGGCTTGTGGA
ATTCCCATCTGAAAATCTATTTCTATCCTAGACTTGGGAATTTTATGAAT
AAACTTTCTATAATTTTATAATTCTTCTTCTTATGAAGGTGCCACAGTAT
GCAATTTATTTCACTTATACTTTCTTAATTAGTTTGTTCATTCTATGGCA
TTCTTTCTCTTCTAGTTGAATAATTTATCACCTACTCATTTCACTTATAT
CTCATTTTCTCTTTTCCTCCTGGAGGGTCTTTTAACATTTTAAGTTTCCG
ATTTGATATGTTTGTATTGTAGCAGAAAATATCAGTTTGGATAATTTCTA
TACTTTTTTCAAAATCATATTACAATGTGTAATAAGGTAGTACCCCCATT
TGTAAAATATCTATGAACCACCCTTTTAAGTTAGGGCTCCCACCATTTTT
CTTTCTGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_i08.g1 MSMg01no381_i08.g1 CHROMAT_FILE:
MSMg01no381_i08.g1 PHD_FILE: MSMg01no381_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:58 2005
         (499 letters)



>mm_chrX_94344735_94345633
          Length = 899

 Score =  942 bits (487), Expect = 0.0
 Identities = 496/499 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accatagagctgccccaataaatctgcttttatattttaatttggcttgaattggctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accatagagctgccccaataaatctgcttttatattttaatttggcttgaattggctcat 260

                                                                       
Query: 61  tttgtcagtggagaaaacccatcgataatttttggcatgtagtgtctatgaggtgctatc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tttgtcagtggagaaaacccatcgataatttttagcatgtagtgtctatgaggtgctatc 320

                                                                       
Query: 121 tccctattgatatatttctatatcatatgtgtgacatatcaaaggaaatgttcacttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccctattgatatatttctatatcatatgtgtgacatatcaaaggaaatgttcacttata 380

                                                                       
Query: 181 tattaggccacttttaaaattccatttgcttttcactttaacactaatcaaaatggacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattaggccacttttaaaattccatttgcttttcactttaacactaatcaaaatggacct 440

                                                                       
Query: 241 ccataatcattttatgtccagtctatttagaggcttgtggaattcccatctgaaaatcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccataatcattttatgtccagtctatttagaggcttgtggaattcccatctgaaaatcta 500

                                                                       
Query: 301 tttctatcctagacttgggaattttatgaataaactttctataattttataattcttctt 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctatcctagacttgggaattctatgaataaactttctataattttataattcttctt 560

                                                                       
Query: 361 cttatgaaggtgccacagtatgcaatttatttcacttatactttcttaattagtttgttc 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 cttatgaaggtgccacagtatgcaatttatttcacttatactttctcaattagtttgttc 620

                                                                       
Query: 421 attctatggcattctttctcttctagttgaataatttatcacctactcatttcacttata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attctatggcattctttctcttctagttgaataatttatcacctactcatttcacttata 680

                              
Query: 481 tctcattttctcttttcct 499
           |||||||||||||||||||
Sbjct: 681 tctcattttctcttttcct 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)