ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCTTATTTCAACCCTGACCAAGTATCATTCAGCAGAAAGTTTTTC
AGTTTTCATGAGTATGTGGACTTTCTGTTGTTTTGGTTGTTATTGACATC
TAGCCTTATTCTGATGTTATCTGATAGAATGCATGTGAGTATTCCCATTT
TCTTGTATCTGTTGATGCTTTTGTTTTATGACCAATTATATTATTAGTTT
TGAGGAATGTTTCATGAGGAACTCAGAAGAATATATATTCTCTTGTTTTG
GCATGAAATGTTCTATTGATATCTATTAAATCCATTTGGGTCAAGACTTC
TGTTAGTTTTACTGTGTCTCTGTTATTTTCTTTTTCTTTTTCTTTTCTTT
TTTTTTTTTTTTTTAGGGATGACCTGTTTCTGCACCTTAGTGGTCTCGGC
TAGAAGACTTGAAGACAGGCCAGCCCACAGATATAGGCATTTCTAATTTT
ATGTACTTGCAACTTGATCATACAGCATGCAAGAATGGGTTAGAGCCTAT
GAGATTTTTAAAATATATTTTGATAACTTAACCCAGGCAATTAAATACCC
AACTGTGGTCCAAAATTTTTAATTGACGGGGACTTTGAATAAAAAGTTCC
AAATTTTTTTTGTGAACCTTTTATCCTGGTGGTTTTTTTTTTTCTTTACC
ATCTCATATCGTGTCACTATTTTTTTTTCTTTTTGGATTCTTTCTTTTTT
CTTTTTCTCTCTAC

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTGCTAACCCTAGTGTCCAAAGCACATGACA
ACAGTAAAGATCCTATCTTACCCCTCCCACCATATGATTAATGTCATTAA
TAAATTTTCTGCTGTCTCAAGCAAATTCATTGGAGGGTAAATACCTTAAC
ATTCAGCTGGATGGTGGTGGCTCATGCCTTTAATCCCAGAACTCAGGAGG
CAGATCTAGGCATATCTCTGAGTTTGAGGTCAGCCTGGTCTATATAGTAT
GTCTCAGGACAGCCAGGGGTACAGGGAGAGATCCTGTCTTGGAAAACAAA
TAAAATAATACAAATATAAATATAAACAAAACAATGCAACATTCTTAACT
GGAAAGTATTTGGCTATAGATGCTGAATGAAAGCCTTTTCTAAAGCTAAA
CTATATGCTGTCAGCAATTGGTAATTTATCTCCACAATACAATAATAAGA
AATACTGAAACTATGTGTACTTCCGTCTGATAACACATAAGTCATTAATA
TACCATACAGAATCAAAAATAATTGTCAGAGTATTCCTTCTAATAAAATA
ATAATATTAAAATAATTCCTTCTAAAGGCTCGGAAAATTTGTCCTGGGTG
GCCTTTGCTTCCACTTTTTTTTTCTTCAAACAACCAAAGAATTTTTTCGA
AAAAAAAATTAAAAATTTTGAGCCTGGACCCCTTGTTTAATGCTCTAATA
CCCTTGGGTAGAAGGGG

Query= MSMg01no383_m18.b1 MSMg01no383_m18.b1 CHROMAT_FILE:
MSMg01no383_m18.b1 PHD_FILE: MSMg01no383_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:56 2005
         (473 letters)



>mm_chrX_30836447_30837325
          Length = 879

 Score =  745 bits (385), Expect = 0.0
 Identities = 452/479 (94%), Gaps = 12/479 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttcttatttcaaccctgaccaagtatcattcagcagaaagtttttcagtttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttcttatttcaaccctgaccaagtatcattcagcagaaagtttttcagtttt 263

                                                                       
Query: 64  catgagtatgtggactttctgttgttttggttgttattgacatctagccttattctgatg 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 catgagtatgtggtctttctgttgttttggttgttattgacatctagccttatcctgatg 323

                                                                       
Query: 124 ttatctgatagaatgcatgtgagtattcccattttcttgtatctgttgatgcttttgttt 183
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||
Sbjct: 324 ttatctgatagaatgcatgagagtattcccattttcttgtatctgttgatgctt--gttt 381

                                                                       
Query: 184 tatgaccaattatattattagttttgaggaatgtttcatgaggaactcagaagaatatat 243
           |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 382 tatgaccaattatattatcagttttggggaatgttccatgaggaactcagaagaatgtat 441

                                                                       
Query: 244 attctcttgttttggcatgaaatgttctattgatatctattaaatccatttgggtcaaga 303
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attctcttgttttggcatgaagtgttctattgatatctattaaatccatttgggtcaaga 501

                                                                       
Query: 304 cttctgttagttttactgtgtctctgttattttctttttcttttt--cttt-tctttttt 360
           ||||||||||||| ||||||||||||||||||| |||||||||||  || | ||| ||||
Sbjct: 502 cttctgttagtttcactgtgtctctgttattttgtttttctttttttctctctctctttt 561

                                                                       
Query: 361 tttttttttttagggatgacctgtttctgcaccttag------tggtctcggctagaaga 414
           ||||||||||| |||||||||||||||||||||||||      ||||||| |||||||||
Sbjct: 562 ttttttttttt-gggatgacctgtttctgcaccttagcactggtggtctcagctagaaga 620

                                                                      
Query: 415 cttgaagacaggccagcccacagatataggcatttctaattttatgtacttgcaacttg 473
           ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttgaagactggccagcacacagatataggcatttctaattttatgtacttgcaacttg 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 879
Length adjustment: 10
Effective length of query: 463
Effective length of database: 869
Effective search space:   402347
Effective search space used:   402347
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)