BAC Information

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BAC

Clone NameMSMg01-385A01
ChromosomeX (Build37)
Map Location 23,404,511 - 23,404,760
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl13, EG635719, Wdr44
Downstream geneEG236749, EG214450, EG245376, LOC546271, LOC100043957, LOC100043206, LOC669000, LOC629204, EG546272, LOC100043216, EG546282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385A01.T7 (MSMg01no385_a01.b1)MSMg01-385A01.TJ (MSMg01no385_a01.g1)
ACCAG488305AG488306
length772754
length of high quality
(start - end)
249 (54 - 302)644 (59 - 702)
definitionCHROMAT_FILE: MSMg01no385_a01.b1 PHD_FILE: MSMg01no385_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:26 2005CHROMAT_FILE: MSMg01no385_a01.g1 PHD_FILE: MSMg01no385_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCCAAGAGTGTTC
CGAATAGCCTTCCCCAGGGAAGAGCACACCAATCAGTTATTTAATAACAA
TAAAATGTATAGCATACATGTGTGTCTGTGTATACACATACATATATGTA
TATAACAATAGTTAATGAAAAAGAGTCCATGGATGTGAAAGAGAACAAGA
GGGCTTATGGGAGGACTTAGAGGGAGGAAAAGAATGGGGTAGTGGTGTAA
TGAGAGAGAGAAATGGGAAAAATGTGGAAAGGGAAAAAAGGGGGATGGAA
GTTAATACTTTTAGAAATGGGGGAAGTACAGATAAAAATTGATCTCAATG
AGGTCAGCTGACCAGGAAACCCCGGCCATACGCTGTAGCTACAACAATAG
TCTTTCTCTATTAATAGATTTTTTTTCCAGCACTGCCTAGAATGAAGAGG
TAGAAAGAAGCCACTGCACCTGTGCTGCTCCCCAATTATAGGTGGCACAT
GTCTGCATTCCTAGTATCCAGTAAGCTGACGCACGACGATTACCCCCTCG
CACTACCCCTCAGTTCCTGCCTGGTCTTACCGAGTGAGACCATTTCCCCC
ACCCCGATCTTTTTCTATGTCTACCACTTCCTCACACAACGATATCTCCT
TATTTGGTGCGGTATGTAACCCCTATNCCGGCTCCACTTCCATATCAGGG
TTCTTTCCCCCCCCTTCTATTTTCTCCCTACCCCTTCTCTTCATCTTTCT
CTTCTTTCTTCACCTCCCCGAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTA
GGGAAAAGCCTCGAAGATATGGGCATAGGGGAAAAGTTCCTGAATAGAAC
AGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTCATAA
AACTGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAGACAAAAAGG
CCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGG
ACTAATGTCCAATATATATATATATATATATATATATTGAACTCAAGAAG
GTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCT
AAACAAAGAATTTTCACCTGAGGAATACTGAATGGCTGAGAAGTCAGTGT
TAGTACTTTTAAAAAGTCAAAAAGTGCTTCCAGTAATCACTCTGGGACTA
TAAACATGCAGAAGAAAAGAAAATGAGTTTTAGAGAAATATTTATATACC
CAAGTTCATAACAGCACTGTTCACAGTAGCTAAGAAATAGAAGTAGCTCA
TATGTTCATGCACGGATAAAAATGTGACACATATATATAACTGGAATATT
ATTCAATTTTAAGGAAGGAAATTCTGTCATATGCTACCATGTGGGTAAAT
CTTAAGGAGTCCATGCCAAGTGAAATAAGGCCATCCTTCAAATACAAATA
ATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_a01.b1 MSMg01no385_a01.b1 CHROMAT_FILE:
MSMg01no385_a01.b1 PHD_FILE: MSMg01no385_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:26 2005
         (249 letters)



>mm_chrX_23404211_23404860
          Length = 650

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%), Gaps = 1/250 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagccttccccagggaagagcacaccaatcagttatttaataacaataaaatgtatagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atagccttccccagggaagagcacaccaatcagttatttaataacaataaaatgtatagc 491

                                                                       
Query: 61  atacatgtgtgtctgtgtatacacatacatatatgtatataacaatagttaatgaaaaag 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atacatgtgtgtttgtgtatacacatacatatatgtatataacaatagttaatgaaaaag 431

                                                                       
Query: 121 agtccatggatgtgaaagagaacaagagggcttatgggaggacttagagggaggaaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agtccatggatgtgaaagagaacaagagggcttatgggaggacttagagggaggaaaaga 371

                                                                       
Query: 181 atggggtagtggtgtaatgagagagagaaatgggaaaaatgtggaaagggaaaaaa-ggg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 370 atggggtagtggtgtaatgagagagagaaatgggaaaaatgtggaaagggaaaaaaaggg 311

                     
Query: 240 ggatggaagt 249
           ||||||||||
Sbjct: 310 ggatggaagt 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space:   153840
Effective search space used:   153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)