BAC Information

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BAC

Clone NameMSMg01-385C07
ChromosomeX (Build37)
Map Location 41,978,191 - 41,978,723
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039987, LOC637141, Wdr40c
Downstream geneWdr40b, LOC665585, 1110059M19Rik, LOC100040038, EG385346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385C07.T7 (MSMg01no385_c07.b1)MSMg01-385C07.TJ (MSMg01no385_c07.g1)
ACCAG488413AG488414
length803753
length of high quality
(start - end)		100 (52 - 151)532 (57 - 588)
definitionCHROMAT_FILE: MSMg01no385_c07.b1 PHD_FILE: MSMg01no385_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:37 2005CHROMAT_FILE: MSMg01no385_c07.g1 PHD_FILE: MSMg01no385_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATACCACTCCTATTTCGAGAGGATCCGCGGAATTCTCCAGATTCCTCCA
TAGATCTCAGTAAGGTTTACCAGCTGAAGTGCCCAAGTTATGATGCTATA
ATTCCATTTGGGAGGAAGAAGAAAGCAATAATGAGGGACAGAAGGAGGGA
GGGATGTGGATGGGATAATGCTGCTGCCTTCTCCCCCCCCTTCTCTTTTT
CTTCTTCCTCCTCTTCTCCTCTCCTCTTCCCTCCCCCCCCCCTTTCCCCC
CCCCCCCCCCCTCCCTTCCTCCTTCCCCCCTTTTCTCTTCCCCTTTTTCC
TTCTCCTCCCCCTCCTTCCTCCTCTCTCCTCCCCTTTCTCTTTCCCCCCC
CTCTCCTCTTCCCCCCCCCCCTCTTCCCCCCTCCTCCCCCCCCCCCTCTC
TTCCCCCTCCTCCCGTTTTCCCTTCCCCTTTTTCTCCTTTTCTCCTCCTC
CTCCTCTCTCACTCCCTCCCTTTCCCCTTTTTCCCCCCTCTTCTCTCTCC
TTTCCCCCCCCTCGCTCCTCCTTCCTCTCCCCCTCTTTCCCCCCCCTCTT
CTTCTCTCCTCCCCCCCCCCCCCCCCTCCCCCTTCTTTCTCTTCTCCCTC
CTCCCCCCCCTCTTTTCCCCCCCCCCCCCCTCTTTCCTCCTCTTTTCCCC
CCTTTTCCTTTCCCCCCCCTCTTTTCTCCTTTTTCCCCTCCCCCCCTCCC
CCCTTTCCCCCTCCCCCTTTTCCTTCCTTTCCTTTTTTCTCCCCCCTTTT
CCCTCCCCCCTCCCCCTTTCCCCCCCCCCCCTCCTCCTTCCCCCCCCCTC
CCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATGGAGTGGGCCAATGAGAAAAAATCTTTAAAGATGAAATTTAT
TGCATTCAACAGTGAATTATTTTTCTGAAATGTGTAGTAGATATGCAGTA
TTTGCTTTCTAAGTAGCCTTTTCTGCTGAGATCTTCTTCACATTAGGCCA
TTAGATTCAGTGGTGATCCAAAGTATGGGAGATGTCATTATTGACAATTA
TAGAAATGTGACCTTAGAAAAAGAATACAGAAATTCCCAGAAGCCAGGGT
TGCTTGAATCTTACTCAGAGCAAGTCACTGAAAGGAATTGAGGTACCCAT
CTACCATGAAGCTTATCTTGACAACTTCTCCATAGCTTTTTTGTTCCTAG
TTTATTTAAGGCACGGTGAATGTCATCTTCAAAGATTTAGGACTCTAGGC
ATTCTCCTCCTTGCTCTCTTTTCATGTATCACTTTTATGTCACAAGTTAT
TGAGTACATTCTGCATTGAAAAGTAACAGCAAATGGGGTGATGAATGATA
AATACAAAAGAAAACATTCTCTCTACCTTCCCTACCATTTTGAATTAGTA
TTTTCTAGTGTTTTCTTCCAATGTCTAGATACAACTCCTTATACTGACTC
AAGGCACCACATCTATTTTAGTTACTAATCTGAAACTGTTATTTTTTGGG
GGATAATTGAATGCATTTTTATCTCCTTTTTGGTACCGAAAATATTCCTG
AAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_c07.g1 MSMg01no385_c07.g1 CHROMAT_FILE:
MSMg01no385_c07.g1 PHD_FILE: MSMg01no385_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:38 2005
         (532 letters)



>mm_chrX_41977991_41978923
          Length = 933

 Score =  984 bits (509), Expect = 0.0
 Identities = 527/533 (98%), Gaps = 1/533 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggagtgggccaatgagaaaaaatctttaaagatgaaatttattgcattcaacagtgaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 733 atggagtgggccaatgagaaaaaatctgtaaagatgaaatttattgcattcaacagtgaa 674

                                                                       
Query: 61  ttatttttctgaaatgtgtagtagatatgcagtatttgctttctaagtagccttttctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttatttttctgaaatgtgtagtagatatgcagtatttgctttctaagtagccttttctgc 614

                                                                       
Query: 121 tgagatcttcttcacattaggccattagattcagtggtgatccaaagtatgggagatgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgagatcttcttcacattaggccattagattcagtggtgatccaaagtatgggagatgtc 554

                                                                       
Query: 181 attattgacaattatagaaatgtgaccttagaaaaagaatacagaaattcccagaagcca 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 attattgacaattataaaaatgtgaccttagaaaaagaatacagaaattcccagaagcca 494

                                                                       
Query: 241 gggttgcttgaatcttactcagagcaagtcactgaaaggaattgaggtacccatctacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 493 gggttgcttgaatcttactcagagcaagtcactgaaaggaattgaggtacccacctacca 434

                                                                       
Query: 301 tgaagcttatcttgacaacttctccatagctttttt-gttcctagtttatttaaggcacg 359
           ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 433 tgaagcttatcttgagaacttctccatagctttttttgttcctagtttatttaagacacg 374

                                                                       
Query: 360 gtgaatgtcatcttcaaagatttaggactctaggcattctcctccttgctctcttttcat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtgaatgtcatcttcaaagatttaggactctaggcattctcctccttgctctcttttcat 314

                                                                       
Query: 420 gtatcacttttatgtcacaagttattgagtacattctgcattgaaaagtaacagcaaatg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gtatcacttttatgtcacaagttattgagtacattctgcattgaaaagtaacagcaaatg 254

                                                                
Query: 480 gggtgatgaatgataaatacaaaagaaaacattctctctaccttccctaccat 532
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gggtgatgaatgataaatacaaaagaaaacattctctctaccttccctaccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 933
Length adjustment: 10
Effective length of query: 522
Effective length of database: 923
Effective search space:   481806
Effective search space used:   481806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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