Query= MSMg01no386_c12.b1 MSMg01no386_c12.b1 CHROMAT_FILE:
MSMg01no386_c12.b1 PHD_FILE: MSMg01no386_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:54 2005
(680 letters)
>mm_chrX_39944379_39945457
Length = 1079
Score = 1276 bits (660), Expect = 0.0
Identities = 672/676 (99%), Gaps = 1/676 (0%)
Strand = Plus / Plus
Query: 5 gaattccacagattgtctctctcatcttaactctgtaacgcttccaaatgataaggacac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacagattgtctctctcatcttaactctgtaacgcttccaaatgataaggacac 264
Query: 65 taataacagcagatggcctaatgaatatttagaaggaggatttaaatggctgtattttca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taataacagcagatggcctaatgaatatttagaaggaggatttaaatggctgtattttca 324
Query: 125 ctagggcttcagtgtgcttccgggttttgcccaccacttccctgtgtgaaagacaaaaat 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 ctagggcttcagtgtgcttccgggttttgcccaccacttccctgtgtgaaagac-aaaat 383
Query: 185 cacacatactcaacagatggcccggtgcaagcttgggtttccagaactctggagattgac 244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacacacactcaacagatggcccggtgcaagcttgggtttccagaactctggagattgac 443
Query: 245 cacctgaccacttaccacacacaaagagtcattttagaaagcatgcggattataaatttg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cacctgaccacttaccacacacaaagagtcattttagaaagcatgcggattataaatttg 503
Query: 305 agagggaacaaaacaaaagaaaaatatatagctgatggatattgaagacctgagttttaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agagggaacaaaacaaaagaaaaatatatagctgatggatattgaagacctgagttttaa 563
Query: 365 tgagaagggagtcaaaaaatcaccctcacaacacattgagcagcactggctgaagtcttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgagaagggagtcaaaaaatcaccctcacaacacattgagcagcactggctgaagtcttt 623
Query: 425 taataacagcttcttacagatctagtaatgatgaaatcctctgtggcaaacagtctactc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taataacagcttcttacagatctagtaatgatgaaatcctctgtggcaaacagtctactc 683
Query: 485 taattaatgtttcatccaaactgtaagcatatctgagtgactccagcagcaacaatgaca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taattaatgtttcatccaaactgtaagcatatctgagtgactccagcagcaacaatgaca 743
Query: 545 tgaaaatctaacacctcattgcacagtacgcttgttattaagttactgtctcacagctcc 604
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 744 tgaaaatctaacacctcattgcacagtatgctagttattaagttactgtctcacagctcc 803
Query: 605 aagctcaccctttaaagacattgctttgtgatgctggggatgagactatgctatctacag 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aagctcaccctttaaagacattgctttgtgatgctggggatgagactatgctatctacag 863
Query: 665 tttggtttgtttgttt 680
||||||||||||||||
Sbjct: 864 tttggtttgtttgttt 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1079
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1069
Effective search space: 716230
Effective search space used: 716230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_c12.g1 MSMg01no386_c12.g1 CHROMAT_FILE:
MSMg01no386_c12.g1 PHD_FILE: MSMg01no386_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:55 2005
(279 letters)
>mm_chrX_40127515_40128193
Length = 679
Score = 524 bits (271), Expect = e-153
Identities = 277/279 (99%)
Strand = Plus / Minus
Query: 1 ttttctgctcagactattctacttcagatttattctgacacccaacaattttactaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttttctgctcagactattctacttcagatttattctgacacccaacaattttactaagct 420
Query: 61 ataggctcattacttttctaatcagtgatagggtatagaatttctacatatataagtatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ataggctcattacttttctaatcagtgatagggtatagaatttctacatatataagtatt 360
Query: 121 gctttaaaggagaataataggaaaacttacatttcccaagttctaacaaaaggaatctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gctttaaaggagaataataggaaaacttacatttcccaagttctaacaaaaggaatctgt 300
Query: 181 tatttcaaaccctctaaaaatgccatacctctctggcaaaactgatacactgggtcattt 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgtttcaaaccctctaaaaatgccatacctctctggcaaaactgatacactgggtcattt 240
Query: 241 tgactctcataattggctgtgcccattggagagtgaaat 279
|||||||||||||||||||| ||||||||||||||||||
Sbjct: 239 tgactctcataattggctgttcccattggagagtgaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
