Query= MSMg01no386_m04.b1 MSMg01no386_m04.b1 CHROMAT_FILE:
MSMg01no386_m04.b1 PHD_FILE: MSMg01no386_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:38 2005
(489 letters)
>mm_chrX_70173100_70173988
Length = 889
Score = 905 bits (468), Expect = 0.0
Identities = 483/488 (98%), Gaps = 1/488 (0%)
Strand = Plus / Minus
Query: 1 tggccgtgaacctacagacatattgtactgatactgcttggaacaactgagacaattgct 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tggccgtgaacctacaggcatattgtactgatactgcttggaacaactgagacaattgct 471
Query: 61 ggtcagtagagttttatagtgatgggaatcaaactagactctgcccagagatgttgaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ggtcagtagagttttatagtgatgggaatcaaactagactctgcccagagatgttgaaca 411
Query: 121 tgtaaaggcttattaacgtacttaatcatatgtctaagactaagtggctagaagagacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgtaaaggcttattaacgtacttaatcatatgtctaagactaagtggctagaagagacca 351
Query: 181 ggtgaaataatcactaacttttggtggccataccagttaaaagcagagtataaaaataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ggtgaaataatcactaacttttggtggccataccagttaaaagcagagtataaaaataaa 291
Query: 241 atttcaggtattaagactccaggatggaccaaatggataaaatggacatcttagagatga 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atttcaggtagtaagactccaggatggaccaaatggataaaatggacatcttagagatga 231
Query: 301 tagtgctaagaaaaggagaggaatgagcttggagtagggtatatagctcagtggtagagc 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 230 tagtgctaagaaaaggagaggaatgagcttggagtagggtgtatagctcagtggtagagc 171
Query: 361 acatctattaagctacatgtttgattcccagcaccacaaaagaattaaattcgattgtaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 acatctattaagctacatgtttgattcccagcaccacaaaagaattaaattcgattgtaa 111
Query: 421 tataatcttaagagcatggctggggcttctgggtttttttttctttctagctttactttt 480
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 110 tataatcttaagagcatggctggggcttctggg-ttttttttctttctagttttactttt 52
Query: 481 tcttcagc 488
||||||||
Sbjct: 51 tcttcagc 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_m04.g1 MSMg01no386_m04.g1 CHROMAT_FILE:
MSMg01no386_m04.g1 PHD_FILE: MSMg01no386_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:38 2005
(553 letters)
>mm_chrX_69982315_69983268
Length = 954
Score = 1052 bits (544), Expect = 0.0
Identities = 550/552 (99%), Gaps = 1/552 (0%)
Strand = Plus / Plus
Query: 1 tctcaattattttttatttgaaaattacctttgttttgcctttctttttcaagagtaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcaattattttttatttgaaaattacctttgttttgcctttctttttcaagagtaata 260
Query: 61 acgaataaaagaattccaggttagcagttacttaattttgaaggtatcattttctttact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgaataaaagaattccaggttagcagttacttaattttgaaggtatcattttctttact 320
Query: 121 tctggattctgttgtttctttgacactttttcccctaagaagtcagcttttaatatattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggattctgttgtttctttgacactttttcccctaagaagtcagcttttaatatattc 380
Query: 181 actttgtctttgatactcagaactttgtctatggtgtgtatataggaaaaatccctgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actttgtctttgatactcagaactttgtctatggtgtgtatataggaaaaatccctgctt 440
Query: 241 ttgttgtataggacttcctgaatttgtggttcactgtctttccttgattttagaaaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgttgtataggacttcctgaatttgtggttcactgtctttccttgattttagaaaaatc 500
Query: 301 tagtttttctccttaaatattgtttcttcttctgtgcttccaatattccaatcccacata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtttttctccttaaatattgtttcttcttctgtgcttccaatattccaatcccacata 560
Query: 361 tgtgaaactcttactttcagtcatgtttctccctttttttgtcctttgtacttttgtgta 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 tgtgaaactcttactttcagtcatgtttccccctttttttgtcctttgtacttttgtgta 620
Query: 421 gattttttt-cctacactattatcttccctttgttaattttcttttcagtgattttaatc 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gattttttttcctacactattatcttccctttgttaattttcttttcagtgattttaatc 680
Query: 480 tgatcttaaattaagctctttatgtacagatttccttgagtctatcaaaagcttactttc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgatcttaaattaagctctttatgtacagatttccttgagtctatcaaaagcttactttc 740
Query: 540 ttaacctctcat 551
||||||||||||
Sbjct: 741 ttaacctctcat 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
