XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGCACCTTGCAATGGTAATGCACATTCCAACATACCAAAATTAAAACAAC
TTTAATTTTCACGTTAAAAAAATGTTTCACTTGTAATTTTTCTTAACATC
TCTGATTCAGTAGTTTCTTTAGGATGTCCTTTTTGCTGTTTGTGGGCAGA
GCAAGAAAACAAGCCCAAGTGTTCAAATTCATACCTATAGAAATGTATCT
AATGTATTAATCAGTGATTAAAAACAATGAATTTATGAAATTCTTAGGCA
AATGAATAGAACTAGAAAATGTCATCCTGAGTGAGGCAACCCAATCACAA
AAGAACACACATGATATGCACTCACTGATAATTGAATATTAGCCCAAAAG
CTCGGAATACCCAAGATACAATTCACAAACCACATAAAACTCAAGAATAA
GGAAGACCAAAGTGGTGGATACTTTGATCCTTCTTAGAAGGGGGAACAAA
ATACCCATGGAAGGAGTTACAGAGANCATGTCTGGAGCAAAGACTGAAGG
AATGACCATGCAAAGACTGCCCCACCTGAGGATCCATCCTATATAGAGTC
CCCCAACCCAGACCCTATTGGTGGATGCCAACCAGAGCTTTCTGAAANGA
GTTTGTTATACTTGTCTCCTGAAAGGTTCCCCACTGCCCGAAAAAACCAA
AAAGGGAGGCGGAAGGCCTACCTTGAACTCAAGCAAAGTTTCCCAACGAG
GAGCTTTGAAAAGGACTCTCGGCCCTTAAAGGTCTTTC

NNTTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCA
TTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTA
TATATATTGGGTATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCT
TTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGAAGGTGTCTTTTGCCT
TGCAGAAGCTTTGCAGTTTCATGAAGTCCCATTTGTCAATTCTCGATCTT
ACAGCACAAGCCATTGCTGTTTTTTTCTGGAATTTTTCCCCTGTGCCCAT
ATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTG
GTTTTCTCTTGTGAGACTACCCCGGGGCCTAGCAAACACAGAAGTGGATG
CTCACAGTCAGCTATTGGACGGATCACAGGCCCCCAATGGAGGAGCTAGA
GAAAGTATCCTTGGAGCTAACGAGATCCGTTTCCCTGTAGGTGTATCCAC
TCTATGACTAACTAGTACCCCGGAAGTCTTGACTCTAGCCGCATTTGATT
ATTAAATGGCCCAGTCCGTTCTTCCCCACAACATGATTCCCCCTGGTTCT
CCCTCTTTTCTTGCCCTCCCCCTGTCCACCTTTTTTTCCTCCCCCCTTTT
CTTTCTTTTTCTCTTTTTTTCCCCCCCATTCTTCTATTTTTTTTTG

Query= MSMg01no388_a24.b1 MSMg01no388_a24.b1 CHROMAT_FILE:
MSMg01no388_a24.b1 PHD_FILE: MSMg01no388_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:18 2005
         (447 letters)



>mm_chrX_143514748_143515594
          Length = 847

 Score =  775 bits (401), Expect = 0.0
 Identities = 410/413 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcaccttgcaatggtaatgcacattccaacataccaaaattaaaacaacttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gaattcagcaccttgcaatggtaatgcacattccaacataccaaaattaaaacaacttta 354

                                                                       
Query: 65  attttcacgttaaaaaaatgtttcacttgtaatttttcttaacatctctgattcagtagt 124
           ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 353 attttcaggttaaaaaaatgtttcacttgtagtttttcttaacatctctgattcagtagt 294

                                                                       
Query: 125 ttctttaggatgtcctttttgctgtttgtgggcagagcaagaaaacaagcccaagtgttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttctttaggatgtcctttttgctgtttgtgggcagagcaagaaaacaagcccaagtgttc 234

                                                                       
Query: 185 aaattcatacctatagaaatgtatctaatgtattaatcagtgattaaaaacaatgaattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aaattcatacctatagaaatgtatctaatgtattaatcagtgattaaaaacaatgaattt 174

                                                                       
Query: 245 atgaaattcttaggcaaatgaatagaactagaaaatgtcatcctgagtgaggcaacccaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 atgaaattcttaggcaaatgaatagaactagaaaatgtcatcctgagtgaggcaacccaa 114

                                                                       
Query: 305 tcacaaaagaacacacatgatatgcactcactgataattgaatattagcccaaaagctcg 364
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 113 tcacaaaagaacacacatgatatgcactctctgataattgaatattagcccaaaagctcg 54

                                                                
Query: 365 gaatacccaagatacaattcacaaaccacataaaactcaagaataaggaagac 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  gaatacccaagatacaattcacaaaccacataaaactcaagaataaggaagac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)