Query= MSMg01no389_j04.b1 MSMg01no389_j04.b1 CHROMAT_FILE:
MSMg01no389_j04.b1 PHD_FILE: MSMg01no389_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:13 2005
(574 letters)
>mm_chrX_158333348_158334321
Length = 974
Score = 1040 bits (538), Expect = 0.0
Identities = 557/566 (98%), Gaps = 6/566 (1%)
Strand = Plus / Plus
Query: 11 gaattcttccagtttc---tagcaatgtcctcagaagttacaactaactctgaagcatgt 67
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattcttccag---cagatagcaatgtcctcagaagttacaactaactctgaagcatgt 267
Query: 68 gctatactgtctcctaagatctttggtatgcctgaacaccagttgcctacgtggtgactg 127
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 268 gctacactgtctcctaagatctttggtatgcctgaacaccagttgcctacgtggtgattg 327
Query: 128 ctggagagcatgcctccctatcagattccctttccctcagccttactcctcctgcccctt 187
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 328 ctggagagcatgcctccctatcagattccttttccctcagccttactcctcctgcccctt 387
Query: 188 actttgctccccaggtataccttgcaaaggaactactggattttgaggaattgtcttgga 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 actttgctccccaggtataccttgcaaaggaactactggattttgaggaattgtcttgga 447
Query: 248 agactacatctaaagaacccaatctaggtagatgtatgataaggtgacacttgagcaggt 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agactacatctaaagaacccaatctaggtagatgtatgataaggtgacacttgagcaggt 507
Query: 308 ttctgacctagagaagggctgagctggggagaattagatataagaaaattataatctaag 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttctgacctagagaagggctgagctggggagaattagatataagaaaattataatctaag 567
Query: 368 agacctgacaggccatagcctctaagtaggatcaagctttgaagagcagcaaaaccctac 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agacctgacaggccatagcctctaagtaggatcaagctttgaagagcagcaaaaccctac 627
Query: 428 ttcaggaacagggttagaagaggcattaggaagggttcccctctcacttcagagtgctac 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttcaggaacagggttagaagaggcattaggaagggttcccctctcacttcagagtgctac 687
Query: 488 tctctccctttatttttcttctcactgcttcctctagcccattcaattttcatttcctcc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tctctccctttatttttcttctcactgcttcctctagcccattcaattttcatttcctcc 747
Query: 548 acagcaaattttctgaaaatttggcc 573
||||||||||||||||||||||||||
Sbjct: 748 acagcaaattttctgaaaatttggcc 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_j04.g1 MSMg01no389_j04.g1 CHROMAT_FILE:
MSMg01no389_j04.g1 PHD_FILE: MSMg01no389_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:13 2005
(583 letters)
>mm_chrX_158514941_158515923
Length = 983
Score = 1073 bits (555), Expect = 0.0
Identities = 576/583 (98%)
Strand = Plus / Minus
Query: 1 catacatagttatctaatgagaactcgatttgtactcggacatacgctttagatgtccat 60
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 783 catacatagttatctaatgagaactagatttgtactcggacatatgctttagatgtccat 724
Query: 61 gttaggctcctgttagtgtactgtggtccccaaggagaaaaggatctctttttgtcaact 120
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 723 gttaggctcctgttagtgtactgtggtccccaaggaggaaaggatctcattttgtcaact 664
Query: 121 gttgtgttcaggtgtttatcataggatattagcacttagcagaccctttaaaagcttcag 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gttgtgttcgggtgtttatcataggatattagcacttagcagaccctttaaaagcttcag 604
Query: 181 gttcctggtcctcagatgcagcaagaatggtcctgcatcttcaagtggactcctattttg 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 603 gttcctggtcctcagatgcagcaagaatggtcctgcatcttcaactggactcctattttg 544
Query: 241 ttgtgctttctgcttactatttgttttcctaatttgtcttgtcttccctgttaatttcgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttgtgctttctgcttactatttgttttcctaatttgtcttgtcttccctgttaatttcgt 484
Query: 301 gttcctaattagtgaagaggactgcactgagatggccttttctttcctttacatcacaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gttcctaattagtgaagaggactgcactgagatggccttttctttcctttacatcacaaa 424
Query: 361 agaagatgggcaagtgcatattttacttactgtgtgcaggagatgacttctccaaccata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agaagatgggcaagtgcatattttacttactgtgtgcaggagatgacttctccaaccata 364
Query: 421 ttttctcttggtgtgccctcaagaggaacaaatgactgtcacatgatctcaaggttgctg 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 363 ttttctcttggtgtgccctcaagaggaacaaatgaatgtcacatgatctcaaggttgctg 304
Query: 481 tgcttcatattatctctggagtttttattgtaggtagggagctgttgatgagtgtcatca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgcttcatattatctctggagtttttattgtaggtagggagctgttgatgagtgtcatca 244
Query: 541 gcctttctagtgctcaaaattggatttttaatagcagtttagt 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gcctttctagtgctcaaaattggatttttaatagcagtttagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
