MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-389J24
Chromosome	X (Build37)
Map Location	92,997,300 - 92,997,774
singlet/doublet	singlet
Overlap gene	A130028J20Rik
Upstream gene	LOC631331, EG631319, Zxda, Gm371, 9630042H07Rik, Arhgef9, LOC619688, LOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, 1700010D01Rik
Downstream gene	Las1l, Msn, Psmb7-ps1, LOC668221, Vsig4, B230358A15Rik, Heph, Gpr165
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC631331 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:631331
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 Proteins pseudo : _no_value

name	EG631319 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:631319 MGI:3648527
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins

name	Zxda (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668171 MGI:1921689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	Gm371 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236914 MGI:2685217
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 Proteins

name	9630042H07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270624 MGI:2444925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arhgef9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236915 MGI:2442233
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC619688 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619688
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	LOC100042189 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042189
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	2810002O09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72345 MGI:1919595
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asb12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70392 MGI:1917642
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668202 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668202
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins

name	AK129302 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245522 MGI:2679294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A130028J20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:547176 MGI:2442133
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700010D01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76386 MGI:1923636
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Las1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76130 MGI:1923380
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Msn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17698 MGI:97167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Psmb7-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19178 MGI:1096396
definition	gene_synonym : Psmb7-ps note : proteasome (prosome, macropain) subunit, beta type 7, pseudogene 1 pseudo : _no_value

name	LOC668221 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668221
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Vsig4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:278180 MGI:2679720
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B230358A15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245525 MGI:3045337
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Heph (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15203 MGI:1332240
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Gpr165 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76206 MGI:1923456
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG631319 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407672 GeneID:631319 MGI:3648527
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins product : predicted gene, EG631319 transcript_id : XM_994723.1

name	Gm371 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83002976 GeneID:236914 MGI:2685217
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 Proteins product : gene model 371, (NCBI) transcript_id : XM_141955.3

name	9630042H07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364187 GeneID:270624 MGI:2444925
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9630042H07 gene transcript_id : NM_178753.3

name	Arhgef9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384851 GeneID:236915 MGI:2442233
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Cdc42 guanine nucleotide exchange factor (GEF) 9 transcript_id : NM_001033329.2

name	2810002O09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:123858769 GeneID:72345 MGI:1919595
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2810002O09 gene transcript_id : NM_175179.3

name	Asb12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370473 GeneID:70392 MGI:1917642
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and SOCS box-containing protein 12 transcript_id : NM_080858.2

name	LOC668202 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271785 GeneID:668202
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : similar to Predicted gene, EG546347 transcript_id : XM_001477719.1

name	AK129302 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51491857 GeneID:245522 MGI:2679294
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence AK129302 transcript_id : NM_001003916.1

name	A130028J20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110347403 GeneID:547176 MGI:2442133
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A130028J20 gene transcript_id : NM_001034907.2

name	1700010D01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364117 GeneID:76386 MGI:1923636
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700010D01 gene transcript_id : NM_029590.2

name	Las1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71979674 GeneID:76130 MGI:1923380
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LAS1-like (S. cerevisiae) transcript_id : NM_152822.2

name	Msn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778914 GeneID:17698 MGI:97167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : moesin transcript_id : NM_010833.2

name	Vsig4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382466 GeneID:278180 MGI:2679720
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : V-set and immunoglobulin domain containing 4 transcript_id : NM_177789.3

name	B230358A15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370938 GeneID:245525 MGI:3045337
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B230358A15 gene transcript_id : NM_172931.2

name	Heph (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754179 GeneID:15203 MGI:1332240
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hephaestin transcript_id : NM_010417.1

name	Heph (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349030 GeneID:15203 MGI:1332240
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hephaestin transcript_id : NM_181273.3

name	Gpr165 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388875 GeneID:76206 MGI:1923456
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 165 transcript_id : NM_029536.2

name	EG631319 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407673 GeneID:631319 MGI:3648527
definition	codon_start : 1 product : hypothetical protein protein_id : XP_999817.1

name	Gm371 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83002977 GeneID:236914 MGI:2685217
definition	codon_start : 1 product : similar to GMCL2 protein_id : XP_141955.3

name	9630042H07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520207 CCDS:CCDS30282.1 GeneID:270624 MGI:2444925
definition	codon_start : 1 note : novel Spin/Ssty repeat containing protein product : hypothetical protein LOC270624 protein_id : NP_848868.1

name	Arhgef9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84370312 GeneID:236915 MGI:2442233
definition	GO_component : GO:0005938 - cell cortex [Evidence TAS]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence TAS]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA] GO_process : GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence TAS] codon_start : 1 note : Cdc42 guanine exchange factor 9; collybistin product : Cdc42 guanine nucleotide exchange factor (GEF) 9 protein_id : NP_001028501.1

name	2810002O09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:123858770 GeneID:72345 MGI:1919595
definition	codon_start : 1 product : RIKEN cDNA 2810002O09 protein_id : NP_780388.2

name	Asb12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20270029 CCDS:CCDS30283.1 GeneID:70392 MGI:1917642
definition	GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 product : ankyrin repeat domain-containing SOCS box protein 12 protein_id : NP_543134.1

name	LOC668202 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271786 GeneID:668202
definition	codon_start : 1 product : similar to Predicted gene, EG546347 protein_id : XP_001477769.1

name	AK129302 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51491858 CCDS:CCDS30284.1 GeneID:245522 MGI:2679294
definition	codon_start : 1 product : hepatocellular carcinoma-associated antigen 127 protein_id : NP_001003916.1

name	1700010D01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21729782 GeneID:76386 MGI:1923636
definition	codon_start : 1 product : hypothetical protein LOC76386 protein_id : NP_083866.1

name	A130028J20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110347404 GeneID:547176 MGI:2442133
definition	codon_start : 1 product : hypothetical protein LOC547176 protein_id : NP_001030079.2

name	Las1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71979675 CCDS:CCDS30287.1 GeneID:76130 MGI:1923380
definition	codon_start : 1 product : LAS1-like protein_id : NP_690035.2

name	Msn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778915 GeneID:17698 MGI:97167
definition	GO_component : GO:0016324 - apical plasma membrane [Evidence IDA]; GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0001931 - uropod [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008092 - cytoskeletal protein binding [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] codon_start : 1 product : moesin protein_id : NP_034963.2

name	Vsig4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244314 CCDS:CCDS30288.1 GeneID:278180 MGI:2679720
definition	codon_start : 1 product : V-set and immunoglobulin domain containing 4 protein_id : NP_808457.1

name	B230358A15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370438 GeneID:245525 MGI:3045337
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : hypothetical protein LOC245525 protein_id : NP_766519.1

name	Heph (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754180 CCDS:CCDS30289.1 GeneID:15203 MGI:1332240
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transporter activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006825 - copper ion transport [Evidence IEA]; GO:0030218 - erythrocyte differentiation [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0006826 - iron ion transport [Evidence TAS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1; haphaestin; sex linked anemia product : hephaestin isoform 1 protein_id : NP_034547.1

name	Heph (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30911107 CCDS:CCDS30290.1 GeneID:15203 MGI:1332240
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transporter activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006825 - copper ion transport [Evidence IEA]; GO:0030218 - erythrocyte differentiation [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0006826 - iron ion transport [Evidence TAS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; haphaestin; sex linked anemia product : hephaestin isoform 2 protein_id : NP_851790.1

name	Gpr165 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626052 CCDS:CCDS30291.1 GeneID:76206 MGI:1923456
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G protein-coupled receptor 165 protein_id : NP_083812.1

name	LOC631331 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:631331
definition	number : 2 pseudo : _no_value

name	LOC631331 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:631331
definition	number : 1 pseudo : _no_value

name	LOC619688 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619688
definition	number : 1 pseudo : _no_value

name	LOC100042189 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042189
definition	number : 2 pseudo : _no_value

name	LOC100042189 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042189
definition	number : 1 pseudo : _no_value

name	LOC668221 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668221
definition	number : 2 pseudo : _no_value

name	LOC668221 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668221
definition	number : 1 pseudo : _no_value

name	Psmb7-ps1 (CDS detail)
type	polyA_signal
link	vega ensembl
xref
definition	gene_synonym : Psmb7-ps

name	Zxda (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:125628683 GeneID:668171 MGI:1921689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, X-linked, duplicated A pseudo : _no_value transcript_id : NR_003292.1

clone name	MSMg01-371O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098M04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-108J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149J16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-355E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274D10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-059D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331H19
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-389J24.T7 (MSMg01no389_j24.b1)	MSMg01-389J24.TJ (MSMg01no389_j24.g1)
ACC	AG491835	AG491836
length	784	741
length of high quality (start - end)	475 (71 - 545)	502 (82 - 583)
definition	CHROMAT_FILE: MSMg01no389_j24.b1 PHD_FILE: MSMg01no389_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:17 2005	CHROMAT_FILE: MSMg01no389_j24.g1 PHD_FILE: MSMg01no389_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:18 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC GCGGAATTCAAGAGATTATTTTAATTTTTCAACTAAATAAAAATATCATT ATAGATTGATATAATGAATATGCTTATAGACGATTAAATGTTACTAGAGA AAATACTTATAATAAATTTAAGATATTTAAGTAATTCAACAAATTTACTG GTATTTTCTTTTAATTTTTACTTTGAACGTGGTTAACAGGCAGCTTTATT TTTAATTCCTAAATGTTATTAAGTAGAAGTAGTTACTAAAGAGGCCTGTG CCATAATTACTCACATTTTCCAAGTGTGTTCTATCTAGAAGGAATGTTAA ATAACTAACCACCACATCAGTTTCTCATCACATTAAACTGGAGAGCTACA CAAATATTATTTTTGTTTTGTAATGGGTTAAACAAACAAAAAGCACTAGT GCATGGATCCCAGGCAGACTAACTCAGCTGCCATCTGGGCCCACATCCAG TGCTTGAGTCAGTCCACCTCAACATCTACTCTGTCAATGAACTATTGGAG TGCATGGAGGAACCCAGGCCTTGCAAAACCCGATGTCCTTACTGAATAGG GCTGGTCCTAGGCCCCCCAGCATGAAGCCCCTGTGGGTGCGGCCCGGGAC TTCATGTTCCGGCTGGAAGAATGCCCCTAAGGCCCGTTTTTGGTCCCTTC TGGGTGCTCCCAATTTGTCGGGTGCCCAGCCTTTCCTCTCCTTTCCCACT TCCTTCCCTTTCCCTCGCCTTCCCTTCCCTTACG	NNNNNCCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGTGAGTCCATCTGGC TCTGGGCTTTTTATAGTCGAGGTATTTTTTTCTGCTCCAATCTCATTGCT GTTTGTGGATGTGTTTAAATTATTTATTTTATTTTGGTTTAATTTGTTAT GTTGTATGCATCTGGAAGTTCATCCACTTTTGAAAGCTTTCCAAGCTGTT GGATTGAGATTTCTAAAATATGTCCAGGTGATTTTTAAAAATTTTCATTA GTGTCTGTTGTAGTTTTTCCATTTTCACTTCTATTTTTATTACATATTTT TTTTTCTATTTCTTTTGGTAAACTGGATAAAGGCTTCACAGACTTTCCAC AGACTATTTCTTTGTTTCATGGATTTTTTTATTGGTTATTTATTTCCTTC AATTTCATTAAGATCTGCCATGATTTTAATTATATCTTCCAGCAACTGGT AGTTTACTTTGATCATGTTTCTAAAGGCCTTAAGATGCACCATTAAGTTT TAAATCTGAGACCTCTCAAATTTTTGATGTCTGCTCTAAGCACTATAAAA TGTTCTCCTAAGAATTCCATAATTACTGCTTACCAATTTTTGGTATGTTT CATTTTCACAACCCTTCCCATCTAAAATTATTTCCCTGAATTTCTCCCTT AAATTATCCATACCCATGTCTTGTCACTCCTACATGAAGTT
quality values	Open. Hide. 0 0 0 3 6 6 11 8 10 14 24 20 20 30 30 39 34 23 14 11 16 10 23 20 24 24 28 41 37 22 12 8 8 10 22 27 27 11 11 11 12 12 12 21 15 17 15 14 14 24 28 37 37 24 23 22 19 22 14 14 14 25 22 22 14 13 8 9 9 9 13 16 28 34 37 41 37 22 19 8 8 8 17 28 39 41 41 50 50 50 36 36 53 35 35 35 31 31 31 43 59 59 50 50 48 48 48 50 48 54 57 68 68 68 68 47 47 47 47 50 50 50 50 68 68 57 54 68 54 59 48 57 57 57 57 68 68 68 68 68 68 57 57 57 57 57 57 59 57 68 48 48 41 41 41 46 50 50 50 50 50 57 68 68 68 68 68 68 68 59 57 57 57 57 57 57 57 57 57 57 54 57 57 57 57 57 57 57 57 57 59 59 59 59 68 59 57 57 57 57 52 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 57 57 57 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 57 57 68 68 68 68 59 59 57 57 57 57 57 57 57 59 59 57 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 68 57 59 57 57 57 57 57 57 59 68 68 59 59 57 57 57 57 57 57 59 57 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 57 57 48 44 44 57 57 54 54 47 57 59 59 57 59 59 57 57 57 48 48 57 59 57 57 44 44 43 43 43 57 48 57 68 68 68 68 59 59 46 46 39 39 39 46 46 54 54 54 57 59 59 54 48 59 59 47 42 40 35 35 28 43 33 36 37 43 59 59 59 46 46 37 39 35 39 39 39 37 39 38 32 34 39 39 39 31 27 23 23 36 36 59 59 47 43 39 31 36 43 43 47 43 47 59 59 41 32 32 41 41 41 37 30 31 31 27 27 25 30 37 37 39 41 35 35 28 28 28 32 32 41 34 40 39 39 33 34 30 28 19 11 17 14 14 19 24 18 18 20 32 24 33 33 35 35 35 32 34 15 15 10 10 10 21 28 36 31 20 16 9 9 9 15 17 18 10 10 10 10 10 10 13 13 21 9 9 9 9 8 8 12 12 10 10 10 10 10 11 8 8 9 11 13 8 9 8 8 8 8 8 8 11 8 9 9 11 14 10 11 10 11 10 10 12 14 15 18 20 12 8 8 8 8 8 9 9 10 12 14 21 24 26 21 16 11 10 11 11 8 8 8 7 8 9 10 10 10 10 9 9 9 11 11 8 6 6 6 8 6 8 8 8 9 9 9 11 10 10 9 9 9 9 9 11 10 10 8 8 8 11 9 8 12 9 6 7 8 8 8 10 8 9 8 10 10 13 11 11 10 11 10 9 9 9 10 10 11 12 12 12 12 12 12 12 8 8 8 8 8 6 8 8 8 8 10 12 10 10 10 8 8 8 8 8 8 8 8 6 6 6 8 8 8 8 8 6 9 10 11 10 8 8 8 8 8 8 11 11 8 9 8 8 6 7 7 8 9 16 16 17 27 22 30 24 25 22 24 13 9 6 6 6 6 6 8 8 11 17 17 14 14 14 22 22 11 8 8 8 6 6	Open. Hide. 0 0 0 0 0 3 6 6 6 11 18 10 10 9 9 15 14 30 32 37 37 31 31 36 29 37 37 37 37 37 37 32 31 37 37 37 30 21 8 7 7 9 9 8 11 11 12 19 21 34 34 39 48 44 53 47 47 47 53 48 59 43 35 30 30 25 19 9 9 9 9 9 11 15 15 13 19 29 29 33 33 48 48 57 57 59 59 59 59 59 53 53 53 53 53 53 57 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 50 50 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 59 57 57 57 54 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 54 54 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 57 57 57 57 50 53 50 50 50 50 28 28 18 18 14 14 14 15 30 34 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 68 68 59 57 57 43 43 30 37 39 39 42 46 46 54 54 54 57 59 59 59 59 57 59 54 57 57 57 57 57 57 57 59 59 59 57 57 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 54 57 57 68 57 68 68 68 68 68 68 57 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 59 68 68 68 68 68 57 57 68 68 68 57 59 57 57 57 50 50 57 52 52 57 57 57 57 57 68 68 59 57 57 57 57 57 57 57 59 68 68 59 57 57 57 37 37 37 42 42 47 47 47 47 47 57 57 59 57 59 59 57 57 68 57 57 57 57 57 43 43 44 57 48 57 48 47 47 57 43 47 47 47 41 47 42 43 30 30 30 42 42 48 48 48 48 48 59 59 43 43 43 47 59 43 37 34 23 23 13 16 16 23 22 18 18 30 25 39 28 25 13 13 12 25 24 28 32 32 33 39 40 39 30 24 22 22 20 28 18 20 15 17 10 10 10 10 10 24 27 27 25 11 9 8 8 8 15 26 32 32 32 32 24 16 11 10 10 8 10 11 8 8 11 9 10 12 26 18 27 28 27 25 18 17 14 15 10 10 10 11 14 18 18 16 19 12 13 16 19 17 10 10 10 17 18 28 27 23 15 17 8 8 8 8 6 6 9 11 8 8 8 8 8 8 11 10 9 9 9 9 10 11 11 15 12 9 8 8 8 8 15 15 15 11 14 10 10 10 10 10 10 8 8 8 8 8 8 19 9 12 12 10 8 10 9 10 8 10 8 6 8 8 9 9 9 11 8 8 6 6 6 6 8 8 10 8 8 8 8 8 8 8 9 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no389_j24.b1 MSMg01no389_j24.b1 CHROMAT_FILE:
MSMg01no389_j24.b1 PHD_FILE: MSMg01no389_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:17 2005
         (475 letters)



>mm_chrX_92997185_92998059
          Length = 875

 Score =  919 bits (475), Expect = 0.0
 Identities = 475/475 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatttttcaactaaataaaaatatcattatagattgatataatgaatatgcttataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ttaatttttcaactaaataaaaatatcattatagattgatataatgaatatgcttataga 531

                                                                       
Query: 61  cgattaaatgttactagagaaaatacttataataaatttaagatatttaagtaattcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cgattaaatgttactagagaaaatacttataataaatttaagatatttaagtaattcaac 471

                                                                       
Query: 121 aaatttactggtattttcttttaatttttactttgaacgtggttaacaggcagctttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aaatttactggtattttcttttaatttttactttgaacgtggttaacaggcagctttatt 411

                                                                       
Query: 181 tttaattcctaaatgttattaagtagaagtagttactaaagaggcctgtgccataattac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tttaattcctaaatgttattaagtagaagtagttactaaagaggcctgtgccataattac 351

                                                                       
Query: 241 tcacattttccaagtgtgttctatctagaaggaatgttaaataactaaccaccacatcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcacattttccaagtgtgttctatctagaaggaatgttaaataactaaccaccacatcag 291

                                                                       
Query: 301 tttctcatcacattaaactggagagctacacaaatattatttttgttttgtaatgggtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tttctcatcacattaaactggagagctacacaaatattatttttgttttgtaatgggtta 231

                                                                       
Query: 361 aacaaacaaaaagcactagtgcatggatcccaggcagactaactcagctgccatctgggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 aacaaacaaaaagcactagtgcatggatcccaggcagactaactcagctgccatctgggc 171

                                                                  
Query: 421 ccacatccagtgcttgagtcagtccacctcaacatctactctgtcaatgaactat 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ccacatccagtgcttgagtcagtccacctcaacatctactctgtcaatgaactat 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information