BAC Information

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BAC

Clone NameMSMg01-389O02
ChromosomeX (Build37)
Map Location 56,358,016 - 56,552,871
singlet/doubletdoublet
Overlap geneFgf13
Upstream geneLOC631581, LOC631621, 4930550L24Rik
Downstream geneF9, EG434782, Mcf2, Atp11c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389O02.T7 (MSMg01no389_o02.b1)MSMg01-389O02.TJ (MSMg01no389_o02.g1)
ACCAG492029AG492030
length751753
length of high quality
(start - end)
247 (77 - 323)554 (81 - 634)
definitionCHROMAT_FILE: MSMg01no389_o02.b1 PHD_FILE: MSMg01no389_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:37 2005CHROMAT_FILE: MSMg01no389_o02.g1 PHD_FILE: MSMg01no389_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,552,625 - 56,552,871)(56,358,016 - 56,358,569)
sequence
NNGGGTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCTCCATTTTCCTTCCACTCCAATCCCTTGAGTTAAATATT
GTTTGTAGTCCTCATAGATACTAAATTGAATCTCTGTACTTATATTATGA
ATACAGTACACATACAGCAATATTCTCATGGGGTCATTTTTGGCAGAAAA
ATTTGTTTTCCCCCATGGGGAAAAAAACCAAAACAACTAAACTATTGTTA
AATTCAAAACCACCCAAGACCATACTAATTCTATTTGGAGGCTGAGCCTG
AGAACATAAGCTATCATTGTAGAGTACATTCAAACATACTGAGTACAACT
ATATGCAGTACAAATTTACAGATTCCTAACAAAATAAGAAAGAGTAGCCA
CAAGTTACTGGATTTTGTTCAGCAGAGATTTGGTGAAGCAAACAAGCTGA
TGACAATGTGTCATACCACACACTTGGCTCAGTTCCTTCGAGAGGAGGAG
TTACGTTCTAATTATTTGTGCAGGCGTTGCTACAATCTTGGCAATACCAA
CCTACTCTCCACTAACCAATGTCTCTTTGACTCTGCCGTGCACACCAAGC
TGATAAATAGGATTCTCGCATCCTCGCAGCTCCCTTCCCTTCTCCCCCTC
CTCCCCCTCTTTCCTTCCTTCCCCCCTTCCTTTCTTCCCCTCCCTCCCCT
TCCTTCCTCCCCCCCTCCCCCCCCCCCGCACCCACCCATCCGACCCCCTC
C
NACGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGATTTTAGAAATTAAGG
TTATTTGCTCAAGGACAGAGTTGGAGAATTGTAGACTATTGGAGCTTGAG
ATGCTCTGGTTGGATTTCAGGACTGGGTGGCTCTATTTTCTGTAACCTAA
ATATATGAAAATCAAAGCTGTTTGTGGCTTCCACAGGAACTGTTTCCTCT
AGGCGCCTCTAGATTATGGGATGGAAATTTTCATGCATTGTCATGTTTAT
GGAACATTCACAGTACTCCCAGAAGTTATATAGTTGAGGTAGGCTGAGTA
GGAATAGTTGAGCTTCAACACATATCTCTCTACCTCTTTCTACAATTCAA
TGGATAGTAAGGCCTCATAGTTACTGAAAGAATTATAAAAATCCACTATC
TTCAGACTTATTTTTACATGTTGAACCCAGGGACTTTAATTTCACTGTGT
GTCTCTAAATACATGTGCATAAATAGCAATTTTAAGAGAGATTCTGTTGT
ATAAAAGTTATATTTAAATTCACTGCCTTTCCCAGATCTACAAAAAGGAA
TGTATGAATTATAATTACAATTATAATATGGCTTTTCCTAGCTCATCTGT
GCAAACACAGCAAAGGACTGCTTTGGTTTATCTTTCCAAAAATTTCAAAG
ATCAGTGCATTGTGTATAAAATATTATACATGTAAAGAAATAATTAAGCA
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_o02.b1 MSMg01no389_o02.b1 CHROMAT_FILE:
MSMg01no389_o02.b1 PHD_FILE: MSMg01no389_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:37 2005
         (247 letters)



>mm_chrX_56552425_56553071
          Length = 647

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccaatcccttgagttaaatattgtttgtagtcctcatagatactaaattgaatctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctccaatcccttgagttaaatattgtttgtagtcctcatagatactaaattgaatctctg 388

                                                                       
Query: 61  tacttatattatgaatacagtacacatacagcaatattctcatggggtcatttttggcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tacttatattatgaatacagtacacatacagcaatattctcatggggtcatttttggcag 328

                                                                       
Query: 121 aaaaatttgttttcccccatggggaaaaaaaccaaaacaactaaactattgttaaattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaaaatttgttttcccccatggggaaaaaaaccaaaacaactaaactattgttaaattca 268

                                                                       
Query: 181 aaaccacccaagaccatactaattctatttggaggctgagcctgagaacataagctatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaaccacccaagaccatactaattctatttggaggctgagcctgagaacataagctatca 208

                  
Query: 241 ttgtaga 247
           |||||||
Sbjct: 207 ttgtaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no389_o02.g1 MSMg01no389_o02.g1 CHROMAT_FILE:
MSMg01no389_o02.g1 PHD_FILE: MSMg01no389_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:37 2005
         (554 letters)



>mm_chrX_56357816_56358769
          Length = 954

 Score = 1056 bits (546), Expect = 0.0
 Identities = 552/554 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagattttagaaattaaggttatttgctcaaggacagagttggagaattgtagactatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagattttagaaattaaggttatttgctcaaggacagagttggagaattgtagactatt 260

                                                                       
Query: 61  ggagcttgagatgctctggttggatttcaggactgggtggctctattttctgtaacctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagcttgagatgctctggttggatttcaggactgggtggctctattttctgtaacctaa 320

                                                                       
Query: 121 atatatgaaaatcaaagctgtttgtggcttccacaggaactgtttcctctaggcgcctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatatgaaaatcaaagctgtttgtggcttccacaggaactgtttcctctaggcgcctct 380

                                                                       
Query: 181 agattatgggatggaaattttcatgcattgtcatgtttatggaacattcacagtactccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattatgggatggaaattttcatgcattgtcatgtttatggaacattcacagtactccc 440

                                                                       
Query: 241 agaagttatatagttgaggtaggctgagtaggaatagttgagcttcaacacatatctctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 agaagttatatagttgaggtaggctgagtaggaatagttgagcttcaacgcatatctctc 500

                                                                       
Query: 301 tacctctttctacaattcaatggatagtaaggcctcatagttactgaaagaattataaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacctctttctacaattcaatggatagtaaggcctcatagttactgaaagaattataaaa 560

                                                                       
Query: 361 atccactatcttcagacttatttttacatgttgaacccagggactttaatttcactgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccactatcttcagacttatttttacatgttgaacccagggactttaatttcactgtgt 620

                                                                       
Query: 421 gtctctaaatacatgtgcataaatagcaattttaagagagattctgttgtataaaagtta 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 gtctctaaatacatgtgcataaatagcaattttaagagagattctgttgtttaaaagtta 680

                                                                       
Query: 481 tatttaaattcactgcctttcccagatctacaaaaaggaatgtatgaattataattacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatttaaattcactgcctttcccagatctacaaaaaggaatgtatgaattataattacaa 740

                         
Query: 541 ttataatatggctt 554
           ||||||||||||||
Sbjct: 741 ttataatatggctt 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)