BAC Information

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BAC

Clone NameMSMg01-391C22
ChromosomeX (Build37)
Map Location 57,748,347 - 57,748,703
singlet/doubletsinglet
Overlap geneLOC100039621
Upstream geneF9, EG434782, Mcf2, Atp11c, LOC666517, LOC631784, LOC100039611
Downstream geneGm715, Hspa9-ps1, EG236831, LOC666559, LOC671636, Sox3, EG631922, Rpl7l1-ps, LOC627159, EG631990, LOC632000, LOC100039759, EG245440, LOC100039778
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391C22.T7 (MSMg01no391_c22.b1)MSMg01-391C22.TJ (MSMg01no391_c22.g1)
ACCAG493017AG493018
length769824
length of high quality
(start - end)
359 (50 - 408)252 (74 - 325)
definitionCHROMAT_FILE: MSMg01no391_c22.b1 PHD_FILE: MSMg01no391_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:18 2005CHROMAT_FILE: MSMg01no391_c22.g1 PHD_FILE: MSMg01no391_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATAGGTCGXXXXXXXXXXXXXXXXXXXXXA
AATGTTAAGGGAGGCAGCTCCATCTGCTGGGCATTACACACACTAATAAT
TGAGACTATTGATAGCAGGACACACTAATAATTGTGACTATTGTTAACAG
GACATATGTCTAGTCTGCAACAGTTTTCATAGTCTATTCTAGGTATATAC
CTCATAAATTTTATATATATATGGCACCATTACCAAACATTTGCAAACCA
ACAAAAAATGATTCTAGACACTATATTGAGCAGATTTGCCTTTCTGGGAT
ACTAACTTATTAACAAGTTTTCCTCTGTTTCTATGAGTATATGTCTCCTT
TATTCAGGTGAGAGTGAGTGTATGTGTGTTTATGTATGTATGTATGTATG
TATGCACACACATACATACTCCCATCTTTCTATTTCCAAAAACCCTCCTC
ACCCATTCCCCCCACCCCCTTCCCCCTCCTCCCCCCCCCCCCCCTTTTTT
TCTACTCTTCTTCCCCCCCCTCCCTTTTCCCCCCCCCCCCCCTCCTTTAT
CACCCCCTCCCCTCCCCCTTTTCCCCCCCTCCCTCCTCCCCCCCCCACCC
CCCTTTTTTCCCCCCCCCTCTTTCTTTTTTTTTTCCCCCCCCCCCCCCTT
TTTTCTTCTCCCTCCTTCTTTCTCTTCCCCCATTCCCCCCCTCCTCTTCT
CCCATCCACTTCTTCTACCCTCCACCCCCCCTACACTCCTTCCCTCTCCC
TCTCCCCCTCCCCTCCTCN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTACATGAA
TGGGTGTTGGATTTTGTCAAATGCTTTCTTGGCATCTAACAAGATGATCA
TGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTATATTGATGGAT
TTCCATATAATAAACCATCCATGCATCCCTGAGATGAAACCTACTTGTTC
AGGAAGGATGATTGTTTTGATGTGTTCTTGGATTCGGTTAGAAGGAATTT
TATTGAGTATTTTTGCATCGATTTTTTTCAGGGAAATTGGTCTGAAGTTC
TCTATCTTTGTTGGTTCTTTCTGTGGCTTAGGTATCAGAGTAATTGTGGC
TTCCTAGAATGAATCCCCCAGCCCACCTTCTGCTTCCATTATTCTATCAC
CCCCCTTACTCCCACCCTTTAATAGTCCACCACAACCTATCACACTTTCT
GCGCCCCCCTGTCTAATTTTTGCGTTCCCTTGCCCCACTCTTTTTCCTAT
TCTCCCCAAACGGCTCTCCCTTTCCCGCAATTCTCCCCCTTTAACTCTTC
TTGTCCCTCTCCTCCCTTTTTTTATCCCCTTCCCCTTTCCCATCCCCCCT
CTCCCTTCTCTCCTTCCTTCTTTCTTTCTCCCCCTCCCCCCCTTTTTACC
CCCTTTCCTTTTCCCCCCCCCCCCCCCTTATCTTTCCCCCCTCACCCCCT
CTCCTCTCCCCCCCTCCCCCTCTCTCCTCCCCCTTTTCCTTTCCCACGTC
CCCTACCCCCCTATTTCTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_c22.b1 MSMg01no391_c22.b1 CHROMAT_FILE:
MSMg01no391_c22.b1 PHD_FILE: MSMg01no391_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:18 2005
         (359 letters)



>mm_chrX_57748171_57748931
          Length = 761

 Score =  679 bits (351), Expect = 0.0
 Identities = 355/357 (99%), Gaps = 2/357 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgttaagggaggcagctccatctgctgggcattacacacactaataattgagactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aaatgttaagggaggcagctccatctgctgggcattacacacactaataattgagactat 474

                                                                       
Query: 61  tgatagcaggacacactaataattgtgactattgttaacaggacatatgtctagtctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgatagcaggacacactaataattgtgactattgttaacaggacatatgtctagtctgca 414

                                                                       
Query: 121 acagttttcatagtctattctaggtatatacctcataaattt--tatatatatatggcac 178
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 413 acagttttcatagtctattctaggtatatacctcataaattttatatatatatatggcac 354

                                                                       
Query: 179 cattaccaaacatttgcaaaccaacaaaaaatgattctagacactatattgagcagattt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cattaccaaacatttgcaaaccaacaaaaaatgattctagacactatattgagcagattt 294

                                                                       
Query: 239 gcctttctgggatactaacttattaacaagttttcctctgtttctatgagtatatgtctc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gcctttctgggatactaacttattaacaagttttcctctgtttctatgagtatatgtctc 234

                                                                    
Query: 299 ctttattcaggtgagagtgagtgtatgtgtgtttatgtatgtatgtatgtatgtatg 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ctttattcaggtgagagtgagtgtatgtgtgtttatgtatgtatgtatgtatgtatg 177


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 761
Length adjustment: 9
Effective length of query: 350
Effective length of database: 752
Effective search space:   263200
Effective search space used:   263200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)