BAC Information

Click to search

BAC

Clone NameMSMg01-391D13
ChromosomeX (Build37)
Map Location 88,002,115 - 88,002,566
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615, LOC629471
Downstream geneLOC100041815, Gm44, LOC670074, LOC667972, LOC667976, Mageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391D13.T7 (MSMg01no391_d13.b1)MSMg01-391D13.TJ (MSMg01no391_d13.g1)
ACCAG493046AG493047
length776778
length of high quality
(start - end)
452 (39 - 490)204 (75 - 278)
definitionCHROMAT_FILE: MSMg01no391_d13.b1 PHD_FILE: MSMg01no391_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:21 2005CHROMAT_FILE: MSMg01no391_d13.g1 PHD_FILE: MSMg01no391_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCGCTAAACGACTACTATTTTCAGAGATCCGCGGAATTCTGCTAG
TTTGTGTTAGCACACACCTTTAATCACAGCACTTGGGAGGCAGAGGCAGG
TGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGAC
AGCCAGGGTTATACAGAGAAACACTGTCTCAAAAACTCAAAAACACAAAC
AAACAAAAAAACAACATATGGAATTCTAAAGGAATTAATAAGAAAAAGAC
CTAAGTTAAATTTATCATACACAGAATATGAGATAAGAAACTCATATTGG
TATAAACTAAGATAGTCAGTGATTGAATATGAATGTGATTATTTAAAAAT
TTATAAGGAAGGCAATGGTTTTAATATAGCTTTTTATATATTTCAAAAAT
ACCTTTATTTCTTCAATTTTAGTTTTTTTCAATATTTTTCTTATCACTCT
CTTTTACATTAATATTATTTCTGACAATACTGAGACTAAGAGTTTCCAGT
TAACTTTTTAGTTTATACTACAATAAGTTCTTTTATAATTTTAAAGACTT
CTTTAAAAATCATGTGCTTTATGCCATACTTTTTGAACACATTCTCAATT
CATTTTCCCCGAAATTAAACCCCTGAAATAACCTACTTTTAAAAATAATT
ATTTTTGGCCAAAAAGCTAATCCCCTTCCAAGGTGGGTAAACAATAAGAA
CATGGCCTTCAACCATTATTGGACTCCTGAAGGGACCTTTACCTGGAGGT
TGTTAACCCCCCCTTTCCTCCTCCCN
CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTCTGTGATG
AAGGGGTGTTGGATTTTGGCAAATGCTTTCCCAGCATCTAAGGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGG
ATTTCCATATATTAAACCATCCCTGCATCCCTGGGATTAAGCCTACTTAT
TATTGATGGATGATTGTTTTGATGCGATTTTGGATTCCTCCTTTTATCAC
CCCGNCGNCCCCTTCCCTCGTTTCCCCCCCCCGCCCCGGCCCGCCCCGTC
CCCTTTTTTCTTCTCCCTCTTTCCCTTCCCCTTCCCCCTTCTTCCCCTTT
CTCATCTTTCTCCCCCCCCCTTTCTTTTTTTTCCCCCCCTTTTCTTCCCC
TCTCTTTCCCCCCTTCTTCCTTCTTTTCTCCCCTTCCCTCTCTTCCCCTT
TTCCCCTCCCTCCCTTTCCCCTTCTCTTCTTCCTTTCCCCTTTCTCCTCC
CTCCCTCTATCCCCTTTCTTTTCCCACCCCTCCTATCCTCAATCCTCCTC
CCCTTTTCCCCCCCCTCCTCTTCCCCCTCTCACCTTTTTTCCTTCTTCTC
CCCCTCCCCCTTTTTCTTTTTCTTCTTCCCCCCCCTCCCCTTTCCTTATC
CCCTTTTCCCTTTCTTCCTTCCTCCTCCTTCTTTTCCTCCTTTTCTTCTT
CCTCCCTCCCCCCCCTTTTCTTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_d13.b1 MSMg01no391_d13.b1 CHROMAT_FILE:
MSMg01no391_d13.b1 PHD_FILE: MSMg01no391_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:21 2005
         (452 letters)



>mm_chrX_88001915_88002766
          Length = 852

 Score =  835 bits (432), Expect = 0.0
 Identities = 447/452 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattctgctagtttgtgttagcacacacctttaatcacagcacttgggaggcagaggca 60
           ||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattctgctaggcagtgttggcacacacctttaatcacagcacttgggaggcagaggca 260

                                                                       
Query: 61  ggtggatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtggatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccaggg 320

                                                                       
Query: 121 ttatacagagaaacactgtctcaaaaactcaaaaacacaaacaaacaaaaaaacaacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatacagagaaacactgtctcaaaaactcaaaaacacaaacaaacaaaaaaacaacata 380

                                                                       
Query: 181 tggaattctaaaggaattaataagaaaaagacctaagttaaatttatcatacacagaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaattctaaaggaattaataagaaaaagacctaagttaaatttatcatacacagaata 440

                                                                       
Query: 241 tgagataagaaactcatattggtataaactaagatagtcagtgattgaatatgaatgtga 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagataagaaactcatattggtatgaactaagatagtcagtgattgaatatgaatgtga 500

                                                                       
Query: 301 ttatttaaaaatttataaggaaggcaatggttttaatatagctttttatatatttcaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatttaaaaatttataaggaaggcaatggttttaatatagctttttatatatttcaaaa 560

                                                                       
Query: 361 atacctttatttcttcaattttagtttttttcaatatttttcttatcactctcttttaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atacctttatttcttcaattttagtttttttcaatatttttcttatcactctcttttaca 620

                                           
Query: 421 ttaatattatttctgacaatactgagactaag 452
           ||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatattatttctgacaatactgagactaag 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)