BAC Information

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BAC

Clone NameMSMg01-391J13
ChromosomeX (Build37)
Map Location 49,834,793 - 50,010,368
singlet/doubletdoublet
Overlap geneGpc3
Upstream geneHs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4
Downstream geneKis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298, LOC100040569, Phf6, Hprt1, C430049B03Rik, Plac1, 4632404H22Rik, 4930432H15Rik, LOC385527, Mospd1, LOC100040609, Etd, Cxx1c, LOC100040644, Cxx1a, Cxx1b, AW822252
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391J13.T7 (MSMg01no391_j13.b1)MSMg01-391J13.TJ (MSMg01no391_j13.g1)
ACCAG493331AG493332
length762764
length of high quality
(start - end)
240 (77 - 316)238 (78 - 315)
definitionCHROMAT_FILE: MSMg01no391_j13.b1 PHD_FILE: MSMg01no391_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:52 2005CHROMAT_FILE: MSMg01no391_j13.g1 PHD_FILE: MSMg01no391_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,834,793 - 49,834,982)(50,010,131 - 50,010,368)
sequence
TGCGGGCGCTAAACGAANAANCACATTTTCGACACTCCGCGGAATTCTGN
GAGGTTTCCACCAGACAGGGGAGGCAGCATTTGGGGATGCAAATAAATAA
ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAATAAAATTATAAAATTTAAAAGTAACTGGGGTTGTATTTTGGTG
TATAACAAATGCAAATCCATAAAAATATTCACTAGGGGGCTTTGGTTGAA
TCTTTTACTCTCATATATACTTTTTCTCCTAGAAATAATATACTATCTCT
CCTCAGGGATTAGCAAAGATGATTATGGCATATGTTTGACACATGCTCTT
GAAACTACAGGGAAGTCTGCAAACCGTGGAGTGAAAAAGATATGGAAGCA
AGGAGCTGCCCCCCCCCCAGACAGCTCAGGAATGCGATTAGATACTCTAG
AACTAGTCTCAAGCTGACTGTATCCAAAGGTGTGACTGAGAAAATGCATG
CTGCAGACTTAGTCCAATGGGCAGCTTCTAGTAAGAACTCAACACATTTC
CTTTGTATTACCATTTTCATTTTATGCGCTTGGCGATTTTGCCTAAAAGA
TGCCTCTGCCCCTGTGCCCCTGGGGGGGGGGAAGCTAAAAAAGGCGCCCC
ATCCCCCAAAAAAAATTACCCAAACTCCGCAGCACCCTGAAAATCCAGAA
AGGCTTTGCCGTCCCCCCAAAATGGCCCTAACCCCCGAACCTCCTCCCCC
CCCCTCAACACG
NNCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTACTGAGAAATGCCTGAAGATTG
CTTGTCCATAATTCACTGTGTTTTCAGCTTTAATTTCAATCTGATTCTGA
AATTTTGCCAAGAGTGTCTAGGAATAACTTGTAATACTATCCAGTGGCTA
GTATCCAGAATGTAGGGTAAACACACAACTGTCCTGGAAATATGCTGGAT
TTGTACCTGGACTGCGTCCATCTTTGTGCTCTTTGTTATGCAACGAATGG
ATCTCTCTCTCTCCCNCTTCNCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTTCTCAGAATTAATCTACTTTTTAAAAA
GTATGTTTCTTTCCCCACTTGTCTATTGTGGATGTGCCGAAGCTATTCCC
TGCTCCCCATGCGTTCTCCCCTACCACCCCTCCCCCTCTCCCCTCCCTCC
CTCTCTCCTTTCCTTTTCCTCTCCCCTTTCTCCCCCTCCCTCTCTCACCT
ATTTCTCCCCCCCCCCCCTCCCCCCTTCTCCCCCCACTTTTCCCCCCCCC
CCTCTTCCCCCATCCCCCTCTTTTCTTTTCTTTCCCCCCCCCCCCCTACC
TTTTTTTTTTTTCTCTTCCTTCCCCTTTTCTTTTCCCTTCTCTCTTTCTC
CTTCCCTTCCCCTTCTTTTCCCTCCTTTTACGCTTCCCCCCCTCCCCCCC
CCCCCCTTTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_j13.b1 MSMg01no391_j13.b1 CHROMAT_FILE:
MSMg01no391_j13.b1 PHD_FILE: MSMg01no391_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:52 2005
         (240 letters)



>mm_chrX_49834543_49835182
          Length = 640

 Score =  368 bits (190), Expect = e-106
 Identities = 190/190 (100%)
 Strand = Plus / Plus

                                                                       
Query: 51  aaataaataaataaataaataaataaataaataaaattataaaatttaaaagtaactggg 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaataaataaataaataaataaataaataaataaaattataaaatttaaaagtaactggg 310

                                                                       
Query: 111 gttgtattttggtgtataacaaatgcaaatccataaaaatattcactagggggctttggt 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gttgtattttggtgtataacaaatgcaaatccataaaaatattcactagggggctttggt 370

                                                                       
Query: 171 tgaatcttttactctcatatatactttttctcctagaaataatatactatctctcctcag 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgaatcttttactctcatatatactttttctcctagaaataatatactatctctcctcag 430

                     
Query: 231 ggattagcaa 240
           ||||||||||
Sbjct: 431 ggattagcaa 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no391_j13.g1 MSMg01no391_j13.g1 CHROMAT_FILE:
MSMg01no391_j13.g1 PHD_FILE: MSMg01no391_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:52 2005
         (238 letters)



>mm_chrX_50009931_50010568
          Length = 638

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactgagaaatgcctgaagattgcttgtccataattcactgtgttttcagctttaatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tactgagaaatgcctgaagattgcttgtccataattcactgtgttttcagctttaatttc 379

                                                                       
Query: 61  aatctgattctgaaattttgccaagagtgtctaggaataacttgtaatactatccagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aatctgattctgaaattttgccaagagtgtctaggaataacttgtaatactatccagtgg 319

                                                                       
Query: 121 ctagtatccagaatgtagggtaaacacacaactgtcctggaaatatgctggatttgtacc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||
Sbjct: 318 ctagtatccagaatgtagggtgaacacacaactgtcctggaaatatgctggacctgtacc 259

                                                                     
Query: 181 tggactgcgtccatctttgtgctctttgttatgcaacgaatggatctctctctctccc 238
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 258 tggactgcgtccatctttgtgctctttgttatacaacgaatggatctctctctctccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)