BAC Information

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BAC

Clone NameMSMg01-391M24
ChromosomeX (Build37)
Map Location 71,129,859 - 71,130,104
singlet/doubletsinglet
Overlap genenone
Upstream geneCetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam
Downstream geneAvpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391M24.T7 (MSMg01no391_m24.b1)MSMg01-391M24.TJ (MSMg01no391_m24.g1)
ACCAG493496AG493497
length761828
length of high quality
(start - end)		391 (65 - 455)247 (76 - 322)
definitionCHROMAT_FILE: MSMg01no391_m24.b1 PHD_FILE: MSMg01no391_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:09 2005CHROMAT_FILE: MSMg01no391_m24.g1 PHD_FILE: MSMg01no391_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCAAACGACTCACTATATTTCCACAACCGCGGAATTCACCCCA
TTTCCACTCAGAGAATATTGGATGATTATAAAATCTACTTAGATATTCTC
TTTATTTACATTTCAAATGCTATCCCCTTTCCCAAAAAGTCCCCAATACC
AATACCCTCCCCCTTCCCCGCTCCCCAACCCACCCAATCCTGCTTCTTGG
CCCTGGCATTACCCCGTACTGGGTCATAAAATCTTGGAATGACCAAGGGC
CTCTCCTCCCATTGTTGGCCGACTAGGCCATCCTCAGCTACAAATGCAAC
TAGAGATATAATTTCTGGGCATACTGGTTATTTCATGTTGTTGTTACTCC
TACAGTATTGGAGAACCCTTTAGATCCTTGGGTACTTTTTCTAGCTCCTT
CATTGTGGGCCCTGTGTTCTGTACAATAGATGACTATAAGCATCCACTTC
TGTATTTGCCAGGCACTGGCATAGCCTCACAAGAGATAGCTATATCANGG
TCCTGTAAACCCCACCTTGTTAGCATATACAATATTGCCTGGGTTTGGGA
ATAATTTACGGAAAAGACCGCCCGTGAACCAACCCCCGGAAGGCCCTTCT
TTCCCCCCCCCCTGAATTTTTCTCCCCACCCCCCCCCTAAACTATTGCTC
CCCCCCCCAAGAAGGAAACCCCCCCCCCTCGCCCTCCTTCTCCTCCAAAC
TCTTGGGCTTCCCCCCCCCCCCCATAAATATAAAAATTCCGCCCACATCC
CCATACACTAN

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGCTATTACACAGA
GAAACCCTGTCTCGGAAAAAAAAACATTAATAAATAAGAATTTAGGGTAG
TAAAATAGCTACAGTAACTTCTACAAAACAAGGAGAAAGCATATTTAATT
CAAGATGATCAAGACAGTGTACTTGGGTTTGCTCTCAGTCTCTTTGTTAA
TTTATTTAATTGAAGATTATTTACATTGGGGGGGGAGGGAGAGCAGGGTC
AGTACAGCTGTCTCCAAAGGTCTTAATATTTCTGATCTCCTGGAGTCGAG
TTGTGAACTCTCTGATATGGGTATTAGAAACTGAATCTAAATCCTGCGTA
AGAGCAGTTCAAATCCCACCACCCACATAGTGGCTCACAACCATCTGTAA
TGGGATCTGATGCCCCACTCTGATATGTCTGAAGACTGCTACCGCGTACT
CTTGCACCCTCCATTACATATTTTTTAACAGACAAACACTACTTACCAGC
TCCCCCCATCCACCTGCCTAAGCCCCCCCCACATACCCCTAGTCTGAATC
CTCACCCACTTCGCCAGCTATGCCCGCCTTCACCTTACCCTGGCATCCTT
CTCCCTTAAAACATTTTTTTTTCTTTTTCTCCCCCCCCCCAAACTTGGGT
CCGCCTTTCCTTGCCCCCCCCCCCCCCCCTTTATCTTCCCCCGCTCCCCC
CTTTTTCTTCGCTCCCCTACCCGTTACTCCTCTCTCTTTTCTTTCGCCCC
CGCCCTTTCCCCGCCTTTACCTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_m24.g1 MSMg01no391_m24.g1 CHROMAT_FILE:
MSMg01no391_m24.g1 PHD_FILE: MSMg01no391_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:09 2005
         (247 letters)



>mm_chrX_71129610_71130256
          Length = 647

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%), Gaps = 1/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccaggctattacacagagaaaccctgtctcgg-aaaaaaaaacattaataaa 59
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 495 caggacagccaggctattacacagagaaaccctgtctcggaaaaaaaaaacattaataaa 436

                                                                       
Query: 60  taagaatttagggtagtaaaatagctacagtaacttctacaaaacaaggagaaagcatat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taagaatttagggtagtaaaatagctacagtaacttctacaaaacaaggagaaagcatat 376

                                                                       
Query: 120 ttaattcaagatgatcaagacagtgtacttgggtttgctctcagtctctttgttaattta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttaattcaagatgatcaagacagtgtacttgggtttgctctcagtctctttgttaattta 316

                                                                       
Query: 180 tttaattgaagattatttacattggggggggagggagagcagggtcagtacagctgtctc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 315 tttaattgaagattatttacattggggggggagggagagcagggtcagtacagctgtctg 256

                 
Query: 240 caaagg 245
           ||||||
Sbjct: 255 caaagg 250


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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