Query= MSMg01no392_h24.b1 MSMg01no392_h24.b1 CHROMAT_FILE:
MSMg01no392_h24.b1 PHD_FILE: MSMg01no392_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:02 2005
(455 letters)
>mm_chrX_128354090_128354943
Length = 854
Score = 741 bits (383), Expect = 0.0
Identities = 444/487 (91%), Gaps = 37/487 (7%)
Strand = Plus / Minus
Query: 5 gaattcatattcttttccctcatgttaaaacttaagatttatatgtaataaaacacataa 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gaattcatattcttttccctcatgttaaaacttaagatttatatgtaataaaacacatag 728
Query: 65 taaagaaagc--------------------------------atatatatatatatg--- 89
|||||||||| |||||||||||||||
Sbjct: 727 taaagaaagcatatatatatatatatatatatatatatatatatatatatatatatgtat 668
Query: 90 -tatatatatataattgtattatgtatttctctatatattagagaagttagatcattaat 148
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 atatatatatataattgtattatgtatttctctatatattagagaagttagatcattaat 608
Query: 149 gtttcacttcaatacattatagtttaatgtattttattcatgttttattattgttgaatt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gtttcacttcaatacattatagtttaatgtattttattcatgttttattattgttgaatt 548
Query: 209 ctcattgttgtggagtaattatatctatactgacaatatcagttctttgattacacatat 268
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cttattgttgtggagtaattatatctatactgacaatatcagttctttgattacacatat 488
Query: 269 ccttttcttcatcagaaaatgagagaaacaattacagagaaaacctctctctattctcaa 328
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ccttttcaacatcagaaaatgagagaaacaattacagagaaaacctctctctattctcaa 428
Query: 329 aagtgaaatcttccaccttctgctctcatttttgttgtacatgtttctactcatatatta 388
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 427 aagtgaaatcttccaccttctgctctca-ttttgttgtacatgtttctactcatatatta 369
Query: 389 acaattttatatacttcaacaatacataatatttttgactattttaatacttgatacaaa 448
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 368 acagttttatatacttcaacaatacataatatttttgactattttaatacttgatataaa 309
Query: 449 tggtgaa 455
|||||||
Sbjct: 308 tggtgaa 302
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 854
Length adjustment: 10
Effective length of query: 445
Effective length of database: 844
Effective search space: 375580
Effective search space used: 375580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_h24.g1 MSMg01no392_h24.g1 CHROMAT_FILE:
MSMg01no392_h24.g1 PHD_FILE: MSMg01no392_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:02 2005
(399 letters)
>mm_chrX_128186303_128187101
Length = 799
Score = 772 bits (399), Expect = 0.0
Identities = 399/399 (100%)
Strand = Plus / Plus
Query: 1 cacattaaaaaaagaaaaaagaaaaaagtctgaataggaaaagggtatagtgttctgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacattaaaaaaagaaaaaagaaaaaagtctgaataggaaaagggtatagtgttctgtga 260
Query: 61 tgccagccaccttaatcatctcaggcattctgagctagttgtgtgttctgctattcaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccagccaccttaatcatctcaggcattctgagctagttgtgtgttctgctattcaagt 320
Query: 121 ctttagatatatatatccaggagaaattattttgctaagtttgctctggacatattgaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttagatatatatatccaggagaaattattttgctaagtttgctctggacatattgaac 380
Query: 181 tctgttcataagaaacatctgaggtctagccttcttagtaacccacaggtgctccaacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgttcataagaaacatctgaggtctagccttcttagtaacccacaggtgctccaacat 440
Query: 241 tatcttacaccttccccattacttctaagctgtacttgcaatttctaggattgttcttga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcttacaccttccccattacttctaagctgtacttgcaatttctaggattgttcttga 500
Query: 301 cacttttaggtagcacacttcatctcctcaaagagaaattctctgagcttgctaagagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacttttaggtagcacacttcatctcctcaaagagaaattctctgagcttgctaagagga 560
Query: 361 tagatggctgatctaattaactaagacatgctaatgtgg 399
|||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagatggctgatctaattaactaagacatgctaatgtgg 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
