BAC Information

Click to search

BAC

Clone NameMSMg01-393N08
ChromosomeX (Build37)
Map Location 93,632,051 - 93,632,539
singlet/doubletsinglet
Overlap geneB230358A15Rik
Upstream gene2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik, Las1l, Msn, Psmb7-ps1, LOC668221, Vsig4
Downstream geneHeph, Gpr165, LOC675824, LOC668234, EG668236, LOC668238, Pgr15l, Eda2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393N08.T7 (MSMg01no393_n08.b1)MSMg01-393N08.TJ (MSMg01no393_n08.g1)
ACCAG495034AG495035
length1,483753
length of high quality
(start - end)		---490 (70 - 559)
definitionCHROMAT_FILE: MSMg01no393_n08.b1 PHD_FILE: MSMg01no393_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:58 2005CHROMAT_FILE: MSMg01no393_n08.g1 PHD_FILE: MSMg01no393_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGGGCGTCCGGTGTGGTTGTCTTATCGCCTCTACTCATCGTTTGTTGCT
CTGTAGCTCCTGCCGTTACACTNCCATATATCNGCTGTACGGGGCGCAGG
TCGTCTCTCCTCTTNTGTCGGCGTGTGCTCTCGGATGCGTGGTCGCGCGC
TGNTATGTGTANGCACGTCTGTACGTCGCGCTCGTTCTCTCAGGTGCGTC
TTTGATGTCTATTATTCTGTTCGCTGTCGTTGCCCTCTTGACGTGCTGGT
GCGCTCGACGCGCGCGCGCGTGCGCGGGTCGGCGGTCGTCTCAGTAGCCT
TGTGTGTGCGTCCTTGTGTCCGTTCTGCGGCTCTGTTCTCTCCGTGCTCT
CTATCTTCTGTTCGCGTCTTCGCTGTCGGCCTCGTCTTGCGGCCGTGTGT
GTTCTCGCTGCTCACTTCTCCGTCTACCTGCTGTGGTCGTTCTCGCGGCG
TCTCTGTCTTCGCGCCTCGGTGCGCTGTGTGTCGGTGTGCGCTGTCGGAT
GCGTCGTCCGTGGCGGTNGTCGCGCGTGCGCGCGCTGATCGCTTNCTCGG
GGGTTCTGTCGCCGCTGATCGCGTTGTCGCGGTAGTCGCTGCGGCGGCGC
TCTGTGCGTGGTGTCTCCGTTGCGCTCGGTGGTGATGTTCCGTGTATGGC
GTCGCGTCTGCGTTCGCGTCGCTGGCGGCTGCGGGTTCGCTCGCGGTGTG
TTGGCTGTTGGTGTGCGCGCGGCGGCGAGTCGTCCTCGCCGTGGTTGCGT
TCTCCGTTTCGCCGCTCGCGCTCTGCCTCGATGTGTTCTGCCGTCGCCCG
TATGCTCTCTGGTTCGCGCTGGCCGCTGTCCTATCTTGTTCCGTATTCCG
ANCCCTTCGCGCTGTGCTCCGCTTATTTTCTTGTTGTGCGGCGCGCCGCT
CGCGCATCCCTCTCATCGCTAGCGCTCGTTCTGTTTTTCATGTTCGCTCT
GTCTCATCATCCGTACCACACGCGTCTGTGTACTGCTGACTCTCCGTCGC
TCCGCGCTATGTTGCGCTATCTGTCATGCGTTGACCTTCGCCGGTGGCTC
GTCCCTCGCTGACATGCGGCCGCGTCTNCTGCGTGTGGGCGCTCGCGTGC
TGTCTTCTATCCTGCGGCGTCTTTGCGCGCGTATGGTTACGTCTCGTGTG
ATCACGGTCGCCGTGCTGTTTGTCTTTCTCCCGCCNGTCTGCTGCGCTGT
TTCCCCCACTGCTCGCTCTTCTCTGTTGCTTGTGTTCTCTGCGTCCGCGT
GCGCATTGTGGCGCTGCGTTTGTAGATCGCGAGATGGTAGCGGCGNGAGT
CGTCGTCGCGTCGCCGNTCGTGCTGCACTGCCNCCTGCCGCGCGTGCGCC
GCGCGCGATCCACAGCGGTGTCCGGCTCTGGTCTCGAGACTTCTCTCTGT
TGGTCTGTCGGATATGTCGTGCGTGCTCGGTCTCTTGCGCGCCATTATGG
TGTCGCTCGATCTCTGCGCGCTGTGTCTGCCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATAAATCTTCAAGGCCAAAATAAATACATT
TAGAACCCAGTTGCTATGTAAGCATGTCTTTGTACTGCTATAAGGAAAAG
TAATAAAGAATACTGAGGCAGACTCTAGGAATGCTTAAGGGGCCAGTGTC
AGATTAATAGCTATATTTGATGTCTAATCCGGAAATATGACACATACCAA
TGATGCCTGTGCAAGAGGAGGAGCTTGGAAATTTAGTGAATACTCTAAAC
CAGTACTATTCAATTTCTCTTTTACCTCTTTCCTTTTAGACACAACAAGG
AAGCACTGTGACTGTAGTTTATCCTTGTTATAAACAAAAATAGTAAAACA
AACAATACAACAACTTTGACCTAAAATGAATAAGAAATATCCATTTGTAA
GGCTATCTCACACTTTGCTGTTTAGACTTAAAATGGAAAGGAGTATTACC
TTAACTGCATAATAAGCTTCAACTTTTATATTTTGCATCAGGGAGTTTTT
CTTAATCTCAGTGAGGTAGAGATAAGAGGTTTTGGCTTATCTTTATTACC
AAGAATGCACCCTGATTCAATAATATTATGTTATTCAGCCTTAATAGGCC
TTTTTCATAATTATGCTATGTAAAATTTTTAAATGTAAGCCCCACTTGGG
ACCAAATTGGTCTCCAAATTTACAAAAATTTTTTTAATATGAAAATGTCT
GGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_n08.g1 MSMg01no393_n08.g1 CHROMAT_FILE:
MSMg01no393_n08.g1 PHD_FILE: MSMg01no393_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:58 2005
         (490 letters)



>mm_chrX_93631851_93632739
          Length = 889

 Score =  901 bits (466), Expect = 0.0
 Identities = 484/490 (98%), Gaps = 1/490 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataaatcttcaaggccaaaataaatacatttagaacccagttgctatgtaagcatgtct 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 cataaatattcaaggccaaaataaatacatttagaacccagttgctatgtaagcatgtct 630

                                                                       
Query: 61  ttgtactgctataaggaaaagtaataaagaatactgaggcagactctaggaatgcttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttgtactgctataaggaaaagtaataaagaatactgaggcagactctaggaatgcttaag 570

                                                                       
Query: 121 gggccagtgtcagattaatagctatatttgatgtctaatccggaaatatgacacatacca 180
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 569 gggccagtgccagattaatagctatatttgatgtctaatccagaaatatgacacatacca 510

                                                                       
Query: 181 atgatgcctgtgcaagaggaggagcttggaaatttagtgaatactctaaaccagtactat 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtgatgcctgtgcaagaggaggagcttggaaatttagtgaatactctaaaccagtactat 450

                                                                       
Query: 241 tcaatttctcttttacctctttccttttagacacaacaaggaagcactgtgactgtagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tcaatttctcttttacctctttccttttagacacaacaaggaagcactgtgactgtagtt 390

                                                                       
Query: 301 tatccttgttataaacaaaaatagtaaaacaaacaatacaacaactttgacctaaaatga 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tatccttgttataaac-aaaatagtaaaacaaacaatacaacaactttgacctaaaatga 331

                                                                       
Query: 361 ataagaaatatccatttgtaaggctatctcacactttgctgtttagacttaaaatggaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ataagaaatatccatttgtaaggctatctcacactttgctgtttagacttaaaatggaaa 271

                                                                       
Query: 421 ggagtattaccttaactgcataataagcttcaacttttatattttgcatcagggagtttt 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggagtgttaccttaactgcataataagcttcaacttttatattttgcatcagggagtttt 211

                     
Query: 481 tcttaatctc 490
           ||||||||||
Sbjct: 210 tcttaatctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 889
Length adjustment: 10
Effective length of query: 480
Effective length of database: 879
Effective search space:   421920
Effective search space used:   421920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |