BAC Information

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BAC

Clone NameMSMg01-393P22
ChromosomeX (Build37)
Map Location 79,827,469 - 79,827,822
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667799, EG629310
Downstream geneDmd, Tsga8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393P22.T7 (MSMg01no393_p22.b1)MSMg01-393P22.TJ (MSMg01no393_p22.g1)
ACCAG495156AG495157
length780768
length of high quality
(start - end)		458 (39 - 496)456 (67 - 522)
definitionCHROMAT_FILE: MSMg01no393_p22.b1 PHD_FILE: MSMg01no393_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:12 2005CHROMAT_FILE: MSMg01no393_p22.g1 PHD_FILE: MSMg01no393_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGGATCCGCGGAATTCC
TTGAATCTCACTTACTTGAAAAAGTCTGCATGTGTGAATTTTATATTTTG
CACTCTAATCAATAATTCCTTAGAGTATCCATTGTCTAACATGCAGAAGA
ATATAACATGATTGCAAGATGTCAGATTATTGGCAATATAATTGTTAGGT
CTCAGACCCAGAGCAAATAGTTGAGGTGCCCATTTAACATATCAAAGTGA
ACCTGCTACCATATTCTCCCAGTATCCCTCAGTCCCTGTTATACAGTATA
GCTAGCATACCGTGTCTGCTATCCTAATCCTTACACTCCTAGGGGCTGCA
ATTCTGGTTCCTTTCCCCGAGTCTGATCTCTACATAATACAACCATTTTC
ACTATGTTCATCTTTTGGCCTCTTGGTTTGGGCTGCCTTGGTTGACAACT
CTTCTCTTCCTCCCCCACAGCCCTCAAAACTCCCTTCATGTTATGGTTTA
GTCTCCCACCCAAGTTTGTCTTGGATTTTCCATCAGCCTGCTTTCTCCTT
ATATCTACCATAAATAATTCTCCCTATTTTTAGAGTGATGGCCTCCTTCC
CCTATTTCATTCCTTTCCATGAACGCAGGCCCCAAACCCAAGGTTGGGAT
AAATGGGGGTTGGCAAAACCCTGGGGCTTTTTGAAATTATAGGAAATTTT
GGGCCCCCGGGGGGGTGGGCAAACAAGGAAAGAACACCCCCCCGGGGGAA
TTCTTTGAAACCTTTTTCCCCCCTTTATTT

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGGAATGCCTCTCCATGCTAGTGAGGCATTCTT
TGGTATCCTAAGCTCTAGCCAATGATACTTACCCACTCTGGAAGCTCCTA
CCTTCTTCCCCAGAATTTTATAGCCCTTGATTCACCCCTAATAAAATTGA
GCTACCTCACTCTAGCTGATCCCAAAAGTCTGGCATTTCCCTCATACTCA
CGGACAATCTGAACCTTGTTGATTCTGCTTCCTTTGTGTTCATGTGCCAG
TGACCAACATCCACAGGGAAAGAAGGAAAAAACACAAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATTTCTCTCATATAGTATAGC
TATAGGTTCTTGAACCAATAAAAGTACCAGAAGTGGTTCTCACTTTATGT
AGTAAGTCGTAAATAAAATCTTAAAGTGGTTGGTTATACCTATATTATGC
ACACCACTGTTATACTATGAAAGATGGCCAGTATGGAGGAAACTTCCAGA
TCTATTCCTAAACAAAAGTTGCAGCTATGTGTCAGTGTGGTTTCACTGAA
GTATCTAAACTGTTTCATTGTAATTAAATGGAAGTCAGGGATAGAGCACT
GGGTTATCATTCTTAAGGGCCAGAATTTTAAGGTTCTTTTTCTAATGGGA
GAACCATTTTAGTTAGACTTGAGAACATATACCCGGAACCCTCAAAAGCT
GAGCTCAAAGGCCCTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_p22.b1 MSMg01no393_p22.b1 CHROMAT_FILE:
MSMg01no393_p22.b1 PHD_FILE: MSMg01no393_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:12 2005
         (458 letters)



>mm_chrX_79827469_79828326
          Length = 858

 Score =  646 bits (334), Expect = 0.0
 Identities = 349/354 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccttgaatctcacttacttgaaaaagtctgcatgtgtgaattttatattttgcac 65
           |||||||||||| |  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaattccttgaagcagaattacttgaaaaagtctgcatgtgtgaattttatattttgcac 295

                                                                       
Query: 66  tctaatcaataattccttagagtatccattgtctaacatgcagaagaatataacatgatt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tctaatcaataattccttagagtatccattgtctaacatgcagaagaatataacatgatt 235

                                                                       
Query: 126 gcaagatgtcagattattggcaatataattgttaggtctcagacccagagcaaatagttg 185
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 gcaagacgtcagattattggcaatataattgttaggtctcagacccagagcaaatagttg 175

                                                                       
Query: 186 aggtgcccatttaacatatcaaagtgaacctgctaccatattctcccagtatccctcagt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aggtgcccatttaacatatcaaagtgaacctgctaccatattctcccagtatccctcagt 115

                                                                       
Query: 246 ccctgttatacagtatagctagcataccgtgtctgctatcctaatccttacactcctagg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ccctgttatacagtatagctagcataccgtgtctgctatcctaatccttacactcctagg 55

                                                                 
Query: 306 ggctgcaattctggttcctttccccgagtctgatctctacataatacaaccatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  ggctgcaattctggttcctttccccgagtctgatctctacataatacaaccatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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